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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.673517 (5 seq.)
>PL171000462
CP002741
Alphaproteobacteria
Sinorhizobium meliloti BL225C plasmid:pSINMEB01
193822
193748
-
Pseudo
CAC
[ENA]
¡û
>W1810357222
PVNM01000176
Alphaproteobacteria
Sinorhizobium meliloti BM806 [PVNM]
622
696
+
Val
CAC
[ENA]
¡û
>W10126561
AEDG01000087
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
1158
1232
+
Pseudo
CAC
[ENA]
¡û
>W11133822
AEDG01000087
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
1158
1232
+
Val
CAC
[ENA]
¡û
>W1710530222
FNOO01000090
Alphaproteobacteria
Sinorhizobium meliloti [FNOO]
7144
7070
-
Pseudo
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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