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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CAT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254697 (1 seq.)
>PL171001239
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
459226
459303
+
Met
CAT
[ENA]
¡û
Identical group No.381794 (1 seq.)
>PL171000996
CP014688
Alphaproteobacteria
Acetobacter persici TMW2.1084 plasmid:pAC1084_1
283885
283809
-
Met
CAT
[ENA]
¡û
Identical group No.381795 (3 seq.)
>PL171000998
CP014688
Alphaproteobacteria
Acetobacter persici TMW2.1084 plasmid:pAC1084_1
283559
283483
-
Met
CAT
[ENA]
¡û
>W1610624090
LHZC01000053
Alphaproteobacteria
Acetobacter malorum [LHZC]
146455
146531
+
Met
CAT
[ENA]
¡û
>W1710755208
LHZC01000053
Alphaproteobacteria
Acetobacter malorum [LHZC]
146455
146531
+
Met
CAT
[ENA]
¡û
Identical group No.407573 (1 seq.)
>PL171000682
CP007795
Alphaproteobacteria
Azospirillum brasilense Az39 plasmid:AbAZ39_p2
810966
810890
-
Met
CAT
[ENA]
¡û
Identical group No.407576 (1 seq.)
>PL171001682
CP022999
Alphaproteobacteria
Rhizobium sp. 10195 plasmid:p10195A
517214
517290
+
Met
CAT
[ENA]
¡û
Identical group No.414261 (1 seq.)
>PL191000434
CP024200
Alphaproteobacteria
Thalassospira marina CSC3H3 plasmid:pCSC3H3 (CP024200)
40420
40344
-
Met
CAT
[ENA]
¡û
Identical group No.438732 (1 seq.)
>PL191001345
CP038144
Alphaproteobacteria
Neokomagataea sp. Ha5 plasmid:unnamed1 (CP038144)
877
801
-
Met
CAT
[ENA]
¡û
Identical group No.445186 (1 seq.)
>PL191001348
CP038232
Alphaproteobacteria
Swingsia sp. F3b2 plasmid:unnamed1 (CP038232)
838
762
-
Met
CAT
[ENA]
¡û
Identical group No.457373 (18 seq.)
>PL171000293
CP001004
Alphaproteobacteria
Methylobacterium radiotolerans JCM 2831 plasmid:pMRAD03
31870
31795
-
Met
CAT
[ENA]
¡û
>PL171000294
CP001005
Alphaproteobacteria
Methylobacterium radiotolerans JCM 2831 plasmid:pMRAD04
15855
15780
-
Met
CAT
[ENA]
¡û
>PL171000295
CP001007
Alphaproteobacteria
Methylobacterium radiotolerans JCM 2831 plasmid:pMRAD06
1453
1378
-
Met
CAT
[ENA]
¡û
>PL171001037
CP015369
Alphaproteobacteria
Methylobacterium phyllosphaerae CBMB27 plasmid:CBMB27-p2
5862
5787
-
Met
CAT
[ENA]
¡û
>C171037991
CP015367
Alphaproteobacteria
Methylobacterium phyllosphaerae CBMB27 [CP015367]
964893
964968
+
Met
CAT
-
¡û
>W141103918
AVNX01000060
Alphaproteobacteria
Methylobacterium sp. L2-4 [AVNX]
10953
10878
-
Met
CAT
[ENA]
¡û
>W141103921
AVNX01000082
Alphaproteobacteria
Methylobacterium sp. L2-4 [AVNX]
3359
3284
-
Met
CAT
[ENA]
¡û
>W1810079105
PEKQ01001124
Alphaproteobacteria
Methylobacterium radiotolerans KUT39 [PEKQ]
864
789
-
Met
CAT
[ENA]
¡û
>C151004749
CP003811
Alphaproteobacteria
Methylobacterium oryzae CBMB20 [CP003811]
1614885
1614960
+
Met
CAT
[Ensembl]
¡û
>W1610042960
BAZM01000226
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
1792
1867
+
Met
CAT
[ENA]
¡û
>W1610047446
BBDH01000376
Alphaproteobacteria
Methylobacterium phyllosphaerae JCM 16408 [BBDH]
584
659
+
Met
CAT
[ENA]
¡û
>W1610047453
BBDH01000909
Alphaproteobacteria
Methylobacterium phyllosphaerae JCM 16408 [BBDH]
585
660
+
Met
CAT
[ENA]
¡û
>W1710040120
BAZM01000226
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
1792
1867
+
Met
CAT
[ENA]
¡û
>W1710044051
BBDH01000376
Alphaproteobacteria
Methylobacterium phyllosphaerae JCM 16408 [BBDH]
584
659
+
Met
CAT
[ENA]
¡û
>W1710044058
BBDH01000909
Alphaproteobacteria
Methylobacterium phyllosphaerae JCM 16408 [BBDH]
585
660
+
Met
CAT
[ENA]
¡û
>W1710539433
FNVI01000040
Alphaproteobacteria
Methylobacterium sp. 190mf [FNVI]
25295
25220
-
Met
CAT
[ENA]
¡û
>W1710563099
FOPK01000037
Alphaproteobacteria
Methylobacterium phyllosphaerae [FOPK]
20243
20318
+
Met
CAT
[ENA]
¡û
>W1710563100
FOPK01000058
Alphaproteobacteria
Methylobacterium phyllosphaerae [FOPK]
9012
9087
+
Met
CAT
[ENA]
¡û
Identical group No.463302 (38 seq.)
>W1710861643
LMDT01000058
Alphaproteobacteria
Ensifer sp. Root1252 [LMDT]
7313
7388
+
Met
CAT
[ENA]
¡û
>W1710867866
LMIQ01000005
Alphaproteobacteria
Ensifer sp. Root231 [LMIQ]
7240
7315
+
Met
CAT
[ENA]
¡û
>W1710868202
LMIX01000003
Alphaproteobacteria
Ensifer sp. Root258 [LMIX]
7241
7316
+
Met
CAT
[ENA]
¡û
>W1710987707
LPUX01000005
Alphaproteobacteria
Sinorhizobium glycinis [LPUX]
168
243
+
Met
CAT
[ENA]
¡û
>PL171001683
CP023065
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 plasmid:pSS05631a
48654
48729
+
Met
CAT
[ENA]
¡û
>PL171001684
CP023065
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 plasmid:pSS05631a
169950
170025
+
Met
CAT
[ENA]
¡û
>PL171001685
CP023069
Alphaproteobacteria
Ensifer sojae CCBAU 05684 plasmid:pSJ05684a
276512
276587
+
Met
CAT
[ENA]
¡û
>PL171001686
CP023072
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 plasmid:pSF83666a
666384
666309
-
Met
CAT
[ENA]
¡û
>PL171001687
CP023072
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 plasmid:pSF83666a
541828
541753
-
Met
CAT
[ENA]
¡û
>PL171001893
U00090
Alphaproteobacteria
Sinorhizobium fredii NGR234 plasmid:pNGR234a
399536
399461
-
Met
CAT
[ENA]
¡û
>PL191000717
CP029233
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 plasmid:pSF45436a (CP029233)
278768
278843
+
Met
CAT
[ENA]
¡û
>PL191000742
CP029453
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 plasmid:pSF25509a (CP029453)
263124
263199
+
Met
CAT
[ENA]
¡û
>W1910183010
BJNI01000132
Alphaproteobacteria
Sinorhizobium fredii NBRC 14780 [BJNI]
2350
2425
+
Met
CAT
[ENA]
¡û
>W1910658210
MBFK01000186
Alphaproteobacteria
Sinorhizobium shofinae CCBAU 251167 [MBFK]
11869
11794
-
Met
CAT
[ENA]
¡û
>W1911409671
NWTC01000001
Alphaproteobacteria
Sinorhizobium fredii PCH1 [NWTC]
83134
83209
+
Met
CAT
[ENA]
¡û
>W1911409716
NWTC01000049
Alphaproteobacteria
Sinorhizobium fredii PCH1 [NWTC]
13288
13363
+
Met
CAT
[ENA]
¡û
>W1810368565
PVZR01000036
Alphaproteobacteria
Ensifer sp. NM-2 [PVZR]
40606
40531
-
Met
CAT
[ENA]
¡û
>W1810675962
QKLQ01000020
Alphaproteobacteria
Ensifer sp. AP48 [QKLQ]
64572
64647
+
Met
CAT
[ENA]
¡û
>W121066033
AJQM01000360
Alphaproteobacteria
Sinorhizobium fredii CCBAU 05557 [AJQM]
931
856
-
Met
CAT
[ENA]
¡û
>W121066082
AJQN01000407
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [AJQN]
112
187
+
Met
CAT
[ENA]
¡û
>W121066136
AJQO01000269
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [AJQO]
87
162
+
Met
CAT
[ENA]
¡û
>W121066183
AJQP01000354
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
132
207
+
Met
CAT
[ENA]
¡û
>W121066279
AJQR01000438
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
125
200
+
Met
CAT
[ENA]
¡û
>W121066328
AJQS01000384
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
110
185
+
Met
CAT
[ENA]
¡û
>W121066375
AJQT01000208
Alphaproteobacteria
Sinorhizobium sojae CCBAU 05684 [AJQT]
130
205
+
Met
CAT
[ENA]
¡û
>W121066419
AJQU01000165
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [AJQU]
127
202
+
Met
CAT
[ENA]
¡û
>W1610024778
AUTB01000091
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
32148
32073
-
Met
CAT
[ENA]
¡û
>W1610024821
AUTC01000188
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
8353
8278
-
Met
CAT
[ENA]
¡û
>W1610085056
CDSA010000003
Alphaproteobacteria
Sinorhizobium fredii HH103 [CDSA]
142199
142274
+
Met
CAT
[ENA]
¡û
>W1610723989
LMDT01000058
Alphaproteobacteria
Ensifer sp. Root1252 [LMDT]
7313
7388
+
Met
CAT
[ENA]
¡û
>W1610730212
LMIQ01000005
Alphaproteobacteria
Ensifer sp. Root231 [LMIQ]
7240
7315
+
Met
CAT
[ENA]
¡û
>W1610730548
LMIX01000003
Alphaproteobacteria
Ensifer sp. Root258 [LMIX]
7241
7316
+
Met
CAT
[ENA]
¡û
>W1610842651
LPUX01000005
Alphaproteobacteria
Sinorhizobium glycinis [LPUX]
168
243
+
Met
CAT
[ENA]
¡û
>W1710021219
AUTB01000091
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
32148
32073
-
Met
CAT
[ENA]
¡û
>W1710021262
AUTC01000188
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
8353
8278
-
Met
CAT
[ENA]
¡û
>W1710089918
CDSA010000003
Alphaproteobacteria
Sinorhizobium fredii HH103 [CDSA]
142199
142274
+
Met
CAT
[ENA]
¡û
>W1710509470
FMXF01000054
Alphaproteobacteria
Sinorhizobium sp. NFACC03 [FMXF]
16313
16238
-
Met
CAT
[ENA]
¡û
>W1710521824
FNGR01000035
Alphaproteobacteria
Ensifer sp. YR511 [FNGR]
46419
46494
+
Met
CAT
[ENA]
¡û
Identical group No.536302 (2 seq.)
>PL191001473
CP040761
Alphaproteobacteria
Paracoccus sp. 2251 plasmid:unnamed5 (CP040761)
73385
73460
+
Met
CAT
[ENA]
¡û
>PL191001474
CP040762
Alphaproteobacteria
Paracoccus sp. 2251 plasmid:unnamed2 (CP040762)
30577
30652
+
Met
CAT
[ENA]
¡û
Identical group No.549124 (3 seq.)
>PL191000226
CP016617
Alphaproteobacteria
Microvirga ossetica V5/3M plasmid:unnamed1 (CP016617)
795541
795468
-
Met
CAT
[ENA]
¡û
>W1911653579
QDGA01000025
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
31180
31255
+
Met
CAT
[ENA]
¡û
>W1911653598
QDGA01000127
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
1991
2066
+
Met
CAT
[ENA]
¡û
Identical group No.684214 (1 seq.)
>PL191000984
CP032328
Alphaproteobacteria
Azospirillum brasilense MTCC4035 plasmid:p7 (CP032328)
102016
102090
+
Met
CAT
[ENA]
¡û
Identical group No.761531 (1 seq.)
>PL171000640
CP006993
Alphaproteobacteria
Methylobacterium sp. AMS5 plasmid:pAMS5a
2664
2590
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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