tRNA genes clustered and arranged according to each identical group

Alphaproteobacteria

Anticodon = CCA

HIT: 4 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.455995 (55 seq.)
>W1710889749 LNBC01000015 Alphaproteobacteria Paracoccus aminovorans (LNBC) 73397 73472 + Trp CCA [ENA]
>W1711135067 LUYN01000014 Alphaproteobacteria Rhodobacterales bacterium Alpha_01 (LUYN) 19685 19610 - Trp CCA [ENA]
>W1712104769 NIPZ01000088 Alphaproteobacteria Paracoccus yeei (NIPZ) 59888 59963 + Trp CCA [ENA]
>C171067783 CP017781 Alphaproteobacteria Rhodobacter sp. LPB0142 (CP017781) 2855884 2855809 - Trp CCA -
>C171107687 CP020442 Alphaproteobacteria Paracoccus yeei FDAARGOS_252 (CP020442) 1155238 1155163 - Trp CCA -
>W131158894 AQUO01000001 Alphaproteobacteria Paracoccus sp. N5 [AQUO] 1883049 1883124 + Trp CCA [ENA]
>C016009 CP000489 Alphaproteobacteria Paracoccus denitrificans PD1222 722941 723016 + Trp CCA [Ensembl]
>WENV183733614 PJTY01006705 [PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment 1277 1202 - Trp CCA [ENA]
>WENV170228404 CEQG01008240 [CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6475 6400 - Trp CCA [ENA]
>WENV170564875 CZPY01000015 [CZPY] metagenome; PAHs-polluted Soil 73397 73472 + Trp CCA [ENA]
>WENV170606714 FUWD010716671 [FUWD] metagenome; unknown 26 101 + Trp CCA [ENA]
>PL191000038 CP000489 Alphaproteobacteria Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489) 722941 723016 + Trp CCA [Ensembl]
>W09103075 AAIT01000032 Alphaproteobacteria Paracoccus denitrificans PD1222 [AAIT] 7114 7039 - Trp CCA [ENA]
>C181099803 CP024422 Alphaproteobacteria Paracoccus yeei TT13 (CP024422) 669466 669391 - Trp CCA -
>C181116766 CP025408 Alphaproteobacteria Paracoccus sp. BM15 (CP025408) 2056908 2056983 + Trp CCA -
>C181190848 CP030239 Alphaproteobacteria Paracoccus mutanolyticus RSP-02 (CP030239) 1147447 1147372 - Trp CCA -
>C181203387 LN832559 Alphaproteobacteria Paracoccus aminovorans (LN832559) 585601 585676 + Trp CCA -
>C191073591 CP031078 Alphaproteobacteria Paracoccus yeei CCUG 32053 (CP031078) 2690502 2690427 - Trp CCA -
>C191134380 CP035090 Alphaproteobacteria Paracoccus denitrificans ATCC 19367 (CP035090, CP035091) 2317340 2317415 + Trp CCA -
>W141558868 JHWH01000007 Alphaproteobacteria Paracoccus yeei ATCC BAA-599 [JHWH] 152279 152204 - Trp CCA [ENA]
>W1910547050 FZNM01000001 Alphaproteobacteria Paracoccus sediminis DSM 26170 (FZNM) 168542 168617 + Trp CCA [ENA]
>W1911397930 NWMQ01000038 Alphaproteobacteria Paracoccus sp. SY (NWMQ) 6952 7027 + Trp CCA [ENA]
>W1810235967 PPGA01000002 Alphaproteobacteria Paracoccus denitrificans ISTOD1 (PPGA) 292942 293017 + Trp CCA [ENA]
>W1810445012 PZKF01000047 Alphaproteobacteria Rhodobacter veldkampii DSM 11550 (PZKF) 16862 16787 - Trp CCA [ENA]
>W1810543584 QDKM01000002 Alphaproteobacteria Pararhodobacter sp. AM505 (QDKM) 57579 57654 + Trp CCA [ENA]
>W1810585300 QFCQ01000001 Alphaproteobacteria Paracoccus thiocyanatus SST (QFCQ) 3729 3804 + Trp CCA [ENA]
>W1810685685 QKZL01000028 Alphaproteobacteria Hwanghaeicola aestuarii DSM 22009 (QKZL) 1318 1243 - Trp CCA [ENA]
>W1810721653 QNSD01000034 Alphaproteobacteria Rhodobacter sp. 140A (QNSD) 7298 7373 + Trp CCA [ENA]
>W1810759466 QPJL01000002 Alphaproteobacteria Paracoccus lutimaris CECT 8525 (QPJL) 21140 21065 - Trp CCA [ENA]
>W1810762330 QPML01000059 Alphaproteobacteria Paracoccus versutus MAL 1HM19 (QPML) 4732 4807 + Trp CCA [ENA]
>W1810862251 QTUJ01000002 Alphaproteobacteria Paracoccus bengalensis DSM 17099 (QTUJ) 587331 587406 + Trp CCA [ENA]
>W1810884875 QUMX01000056 Alphaproteobacteria Paracoccus versutus DSM 582 (QUMX) 5330 5405 + Trp CCA [ENA]
>C11117048 CP002897 Alphaproteobacteria Paracoccus denitrificans SD1 2919112 2919037 - Trp CCA [Ensembl]
>W1511325042 JQFU01000066 Alphaproteobacteria Rhodovulum sp. NI22 [JQFU] 806 881 + Trp CCA [ENA]
>W1511348608 JRKO01000019 Alphaproteobacteria Paracoccus versutus DSM 582 [JRKO] 4792 4867 + Trp CCA [ENA]
>W1511348666 JRKP01000086 Alphaproteobacteria Paracoccus sanguinis 39524 [JRKP] 1070 995 - Trp CCA [ENA]
>W1511348680 JRKQ01000010 Alphaproteobacteria Paracoccus sp. 5503 [JRKQ] 41159 41084 - Trp CCA [ENA]
>W1511348755 JRKR01000126 Alphaproteobacteria Paracoccus sanguinis 10990 [JRKR] 1022 947 - Trp CCA [ENA]
>W1511348782 JRKS01000009 Alphaproteobacteria Paracoccus sphaerophysae HAMBI 3106 [JRKS] 53977 53902 - Trp CCA [ENA]
>W1511348819 JRKT01000013 Alphaproteobacteria Paracoccus sp. 4681 [JRKT] 41044 40969 - Trp CCA [ENA]
>C161029307 CP010869 Alphaproteobacteria Confluentimicrobium sp. EMB200-NS6 378275 378350 + Trp CCA [Ensembl]
>W121060012 AJFB01001406 Alphaproteobacteria Paracoccus denitrificans SD1 [AJFB] 228 153 - Trp CCA [ENA]
>W1610049849 BBFH01000895 Alphaproteobacteria Paracoccus denitrificans JCM 21484 (BBFH) 711 636 - Trp CCA [ENA]
>W1610081509 BDDO01000043 Alphaproteobacteria Paenirhodobacter sp. MME-103 (BDDO) 152 227 + Trp CCA [ENA]
>W1610750127 LNBC01000015 Alphaproteobacteria Paracoccus aminovorans (LNBC) 73397 73472 + Trp CCA [ENA]
>W1610946187 LUYN01000014 Alphaproteobacteria Rhodobacterales bacterium Alpha_01 (LUYN) 19685 19610 - Trp CCA [ENA]
>W1710046248 BBFH01000895 Alphaproteobacteria Paracoccus denitrificans JCM 21484 (BBFH) 711 636 - Trp CCA [ENA]
>W1710080160 BDDO01000043 Alphaproteobacteria Paenirhodobacter sp. MME-103 (BDDO) 152 227 + Trp CCA [ENA]
>W1710518481 FNEA01000046 Alphaproteobacteria Paracoccus denitrificans (FNEA) 19526 19451 - Trp CCA [ENA]
>W1710528233 FNNA01000012 Alphaproteobacteria Paracoccus sanguinis (FNNA) 8750 8825 + Trp CCA [ENA]
>W1710547690 FODE01000015 Alphaproteobacteria Paracoccus alcaliphilus (FODE) 70812 70737 - Trp CCA [ENA]
>W1710563607 FOPU01000052 Alphaproteobacteria Paracoccus aminovorans (FOPU) 4924 4999 + Trp CCA [ENA]
>W1710574702 FOYK01000046 Alphaproteobacteria Paracoccus denitrificans (FOYK) 4747 4822 + Trp CCA [ENA]
>W1710581786 FPKI01000065 Alphaproteobacteria Paracoccus pantotrophus (FPKI) 19246 19171 - Trp CCA [ENA]
>W1710596209 FTMK01000035 Alphaproteobacteria Paracoccus thiocyanatus (FTMK) 19755 19680 - Trp CCA [ENA]
Identical group No.463568 (55 seq.)
>W1710991257 LPXN01000158 Alphaproteobacteria Oceanibaculum pacificum (LPXN) 211 286 + Trp CCA [ENA]
>W1711628171 MPOB01000020 Alphaproteobacteria Oceanibaculum sp. L54-1-50 (MPOB) 251 326 + Trp CCA [ENA]
>PL171000683 CP007795 Alphaproteobacteria Azospirillum brasilense Az39 plasmid:AbAZ39_p2 52393 52318 - Trp CCA [ENA]
>PL171000938 CP012916 Alphaproteobacteria Azospirillum brasilense Sp 7 plasmid:ABSP7_p2 806485 806410 - Trp CCA [ENA]
>PL171001770 HE577329 Alphaproteobacteria Azospirillum brasilense Sp245 sp245 plasmid:AZOBR_p2 272620 272695 + Trp CCA [ENA]
>W131045458 AMRL01000043 Alphaproteobacteria Oceanibaculum indicum P24 [AMRL] 15508 15433 - Trp CCA [ENA]
>W131109473 APHV01000270 Alphaproteobacteria Azospirillum brasilense FP2 [APHV] 15479 15554 + Trp CCA [ENA]
>W131223677 AUCG01000003 Alphaproteobacteria Azospirillum irakense DSM 11586 [AUCG] 111227 111302 + Trp CCA [ENA]
>WENV180282727 OBIC01002574 [OBIC] beach sand metagenome; beach sand 2512 2437 - Trp CCA [ENA]
>WENV180309517 OBJS01004202 [OBJS] beach sand metagenome; beach sand 706 631 - Trp CCA [ENA]
>WENV180368276 OBOF01048912 [OBOF] marine metagenome; ENVO:00002010 135 210 + Trp CCA [ENA]
>WENV180393562 OBPQ01080057 [OBPQ] marine metagenome; polypropylene bottle 315 240 - Trp CCA [ENA]
>WENV180588455 OCOP01061594 [OCOP] marine metagenome; water 398 470 + Trp CCA [ENA]
>WENV180595195 OCPB01041848 [OCPB] marine metagenome; ENVO:00002149 394 319 - Trp CCA [ENA]
>WENV181192774 OEPS011023594 [OEPS] soil metagenome; soil 206 131 - Trp CCA [ENA]
>W141223561 BADK01000106 Alphaproteobacteria Azospirillum sp. B506 [BADK] 28 103 + Trp CCA [ENA]
>WENV183725900 PJQF01033406 [PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm 362 437 + Trp CCA [ENA]
>WENV183735044 PJUA01000556 [PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment 314 389 + Trp CCA [ENA]
>WENV183736387 PJUC01001698 [PJUC] soil metagenome; Soil enriched on filter paper 3865 3790 - Trp CCA [ENA]
>WENV170680890 LFEF01030955 [LFEF] freshwater metagenome; waterbloom 2840 2765 - Trp CCA [ENA]
>WENV170771809 LXNI01004385 [LXNI] sponge metagenome; marine sponge reef 290 365 + Trp CCA [ENA]
>WENV170774637 LXNJ01051894 [LXNJ] sponge metagenome; marine sponge reef 266 341 + Trp CCA [ENA]
>WENV170902406 MDTD01184821 [MDTD] marine metagenome; seawater 5436 5361 - Trp CCA [ENA]
>WENV170959360 MKWU01004495 [MKWU] sponge metagenome; 16129 16054 - Trp CCA [ENA]
>PL191000275 CP022363 Alphaproteobacteria Azospirillum sp. TSH58 plasmid:TSH58_p03 (CP022363) 613601 613526 - Trp CCA [ENA]
>PL191000967 CP032323 Alphaproteobacteria Azospirillum brasilense MTCC4035 plasmid:p2 (CP032323) 112298 112373 + Trp CCA [ENA]
>PL191001009 CP032341 Alphaproteobacteria Azospirillum brasilense MTCC4038 plasmid:p2 (CP032341) 242156 242231 + Trp CCA [ENA]
>PL191001061 CP032347 Alphaproteobacteria Azospirillum brasilense MTCC4039 plasmid:p2 (CP032347) 78789 78714 - Trp CCA [ENA]
>C181177424 CP029353 Alphaproteobacteria Azospirillum sp. CFH 70021 (CP029352, CP029353, CP029354, CP029355) 902703 902778 + Trp CCA -
>C181185924 CP029829 Alphaproteobacteria Azospirillum sp. M2T2B2 (CP029829) 337094 337169 + Trp CCA -
>W141520297 JGVN01000003 Alphaproteobacteria Azospirillum brasilense [JGVN] 625433 625358 - Trp CCA [ENA]
>C191170695 CP039634 Alphaproteobacteria Azospirillum sp. TSH100 (CP039634, CP039635, CP039636, CP039637, CP039638, CP039639) 1425255 1425330 + Trp CCA -
>C191170812 CP039650 Alphaproteobacteria Azospirillum sp. TSA2s TSA2S (CP039642, CP039645, CP039646, CP039647, CP039648, CP039649, CP039650) 1731487 1731562 + Trp CCA -
>W1910545514 FZLR01000013 Alphaproteobacteria Rhodospirillaceae bacterium Spongia-Bin9 (FZLR) 217 292 + Trp CCA [ENA]
>W1910548170 FZOI01000003 Alphaproteobacteria Azospirillum sp. RU38E (FZOI) 272440 272365 - Trp CCA [ENA]
>W1910548552 FZOP01000003 Alphaproteobacteria Azospirillum sp. RU37A (FZOP) 272440 272365 - Trp CCA [ENA]
>W1910612957 LGQT01000160 Alphaproteobacteria Azospirillum sp. TSH7 (LGQT) 273 348 + Trp CCA [ENA]
>W1910613021 LGQU01000169 Alphaproteobacteria Azospirillum sp. TSH20 (LGQU) 279 354 + Trp CCA [ENA]
>W1910613034 LGQV01000022 Alphaproteobacteria Azospirillum sp. TSH58 (LGQV) 16072 16147 + Trp CCA [ENA]
>W1910613203 LGQX01000100 Alphaproteobacteria Azospirillum sp. TSH100 (LGQX) 271 346 + Trp CCA [ENA]
>W1910613302 LGQZ01000131 Alphaproteobacteria Azospirillum sp. TSO22-1 (LGQZ) 16289 16214 - Trp CCA [ENA]
>W1910613415 LGRK01000056 Alphaproteobacteria Azospirillum sp. Sp 7 (LGRK) 140254 140179 - Trp CCA [ENA]
>W1911138098 NOWT01000010 Alphaproteobacteria Azospirillum brasilense 2A1 (NOWT) 27252 27327 + Trp CCA [ENA]
>W1911768752 QXHE01000005 Alphaproteobacteria Azospirillum brasilense SR80 (QXHE) 35958 35883 - Trp CCA [ENA]
>W1810222236 POQV01000003 Alphaproteobacteria Azospirillum brasilense Ab-V5 (POQV) 148328 148403 + Trp CCA [ENA]
>W1810223542 POTD01000007 Alphaproteobacteria Azospirillum brasilense Ab-V6 (POTD) 148115 148190 + Trp CCA [ENA]
>W1810226097 POWG01000019 Alphaproteobacteria Azospirillum brasilense REC3 (POWG) 75415 75340 - Trp CCA [ENA]
>W1810692550 QLKQ01000003 Alphaproteobacteria Azospirillum brasilense HAMBI_3172 (QLKQ) 114736 114811 + Trp CCA [ENA]
>C10101250 AP010946 Alphaproteobacteria Azospirillum sp. B510 648712 648787 + Trp CCA [Ensembl]
>C121016576 FQ311868 Alphaproteobacteria Azospirillum lipoferum 4B 418092 418167 + Trp CCA [Ensembl]
>C161085677 CP015285 Alphaproteobacteria Azospirillum humicireducens SgZ-5 395844 395919 + Trp CCA [Ensembl]
>W1610845929 LPXN01000158 Alphaproteobacteria Oceanibaculum pacificum (LPXN) 211 286 + Trp CCA [ENA]
>W1710607918 FXAK01000007 Alphaproteobacteria Azospirillum oryzae (FXAK) 635265 635340 + Trp CCA [ENA]
>W1710626710 JPIR01000065 Alphaproteobacteria Azospirillum brasilense (JPIR) 28924 28849 - Trp CCA [ENA]
>W1710626799 JPIS01000150 Alphaproteobacteria Azospirillum brasilense (JPIS) 1537 1612 + Trp CCA [ENA]
Identical group No.551762 (1 seq.)
>PL171001253 CP016463 Alphaproteobacteria Bosea sp. RAC05 plasmid:pBSY19_1 478462 478537 + Trp CCA [ENA]
Identical group No.585817 (4 seq.)
>PL191001406 CP039965 Alphaproteobacteria Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965) 579751 579676 - Trp CCA [ENA]
>W1910574853 JQHS01000004 Alphaproteobacteria Falsirhodobacter deserti W402 (JQHS) 980291 980216 - Trp CCA [ENA]
>W1511698373 LGHS01000061 Alphaproteobacteria Pseudorhodobacter aquimaris KCTC 23043 [LGHS] 60915 60840 - Trp CCA [ENA]
>W1710593901 FSQW01000001 Spirochaetes Sphingorhabdus marina DSM 22363 (FSQW) 1039640 1039565 - Trp CCA [ENA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK