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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.492874 (55 seq.)
>W1710853428
LLWQ01000219
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
32621
32694
+
Gly
CCC
[ENA]
¡û
>W1710991302
LPXO01000046
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
795
868
+
Gly
CCC
[ENA]
¡û
>W1711621300
MPCZ01000007
Alphaproteobacteria
Roseobacter sp. MedPE-SWchi [MPCZ]
36548
36621
+
Gly
CCC
[ENA]
¡û
>W1712104759
NIPZ01000065
Alphaproteobacteria
Paracoccus yeei [NIPZ]
13873
13946
+
Gly
CCC
[ENA]
¡û
>C016036
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1771765
1771692
-
Gly
CCC
[Ensembl]
¡û
>w012795
AAMT01000022
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [AAMT]
52536
52609
+
Gly
CCC
[ENA]
¡û
>WENV180368681
OBOF01200014
[OBOF] marine metagenome; ENVO:00002010
338
265
-
Gly
CCC
[ENA]
¢þ
>W141142913
AWRV01000367
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
1472
1545
+
Gly
CCC
[ENA]
¡û
>WENV181634028
OGMW01000403
[OGMW] metagenome; Human gut stool
43484
43411
-
Gly
CCC
[ENA]
¢þ
>WENV181906651
OGXZ01002641
[OGXZ] human gut metagenome; faeces
1524
1451
-
Gly
CCC
[ENA]
¢þ
>W141216619
AZVA01000004
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
60592
60519
-
Gly
CCC
[ENA]
¡û
>W141277336
JAEM01000097
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
201
274
+
Gly
CCC
[ENA]
¡û
>W141277361
JAEN01000011
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
140954
140881
-
Gly
CCC
[ENA]
¡û
>W141279607
JAGK01000095
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
201
274
+
Gly
CCC
[ENA]
¡û
>WENV183581796
OOCP01000207
[OOCP] human gut metagenome; human gut
10909
10982
+
Gly
CCC
[ENA]
¢þ
>WENV183729386
PJTQ01032173
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
107
180
+
Gly
CCC
[ENA]
¢þ
>WENV183739587
PJUE01035621
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
121
194
+
Gly
CCC
[ENA]
¢þ
>WENV170807918
MDSW01106310
[MDSW] marine metagenome; seawater
2184
2257
+
Gly
CCC
[ENA]
¢þ
>PL191000065
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1771765
1771692
-
Gly
CCC
[Ensembl]
¡û
>C181099811
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
162868
162795
-
Gly
CCC
-
¡û
>C181190856
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
617986
617913
-
Gly
CCC
-
¡û
>C181203415
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
2183226
2183153
-
Gly
CCC
-
¡û
>C191073599
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2157334
2157261
-
Gly
CCC
-
¡û
>C191134402
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
513055
512982
-
Gly
CCC
-
¡û
>W141558848
JHWH01000001
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
447525
447452
-
Gly
CCC
[ENA]
¡û
>W09103046
AAIT01000003
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
148207
148134
-
Gly
CCC
[ENA]
¡û
>W141813619
JQEZ01000005
Alphaproteobacteria
Ruegeria halocynthiae [JQEZ]
37221
37148
-
Gly
CCC
[ENA]
¡û
>W1910859318
NBYO01000001
Alphaproteobacteria
Notoacmeibacter marinus XMTR2A4 [NBYO]
322428
322355
-
Gly
CCC
[ENA]
¡û
>W1911495103
OBMP01000002
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
517917
517990
+
Gly
CCC
[ENA]
¡û
>W1810195552
PKRQ01000002
Alphaproteobacteria
Tabrizicola sp. TH137 [PKRQ]
242529
242456
-
Gly
CCC
[ENA]
¡û
>W1810235978
PPGA01000004
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
177304
177377
+
Gly
CCC
[ENA]
¡û
>W1810486242
QAXT01000001
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
459064
459137
+
Gly
CCC
[ENA]
¡û
>W1810585317
QFCQ01000033
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
1406
1479
+
Gly
CCC
[ENA]
¡û
>W1810625979
QHKP01000003
Alphaproteobacteria
Notoacmeibacter marinus HMA008 [QHKP]
117467
117540
+
Gly
CCC
[ENA]
¡û
>W1810750725
QOZU01000003
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
467
540
+
Gly
CCC
[ENA]
¡û
>W1810762311
QPML01000019
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
78264
78191
-
Gly
CCC
[ENA]
¡û
>W1810884840
QUMX01000002
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
78160
78087
-
Gly
CCC
[ENA]
¡û
>W1810913134
QVMW01000013
Alphaproteobacteria
Rhodobacteraceae bacterium 63075 [QVMW]
84121
84194
+
Gly
CCC
[ENA]
¡û
>W1511348606
JRKO01000018
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
19579
19652
+
Gly
CCC
[ENA]
¡û
>W11143049
AEPN01000023
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
56335
56262
-
Gly
CCC
[ENA]
¡û
>W1610630922
LIKT01000038
Alphaproteobacteria
Phaeobacter sp. 11ANDIMAR09 [LIKT]
7962
7889
-
Gly
CCC
[ENA]
¡û
>W1610716552
LLWQ01000219
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
32621
32694
+
Gly
CCC
[ENA]
¡û
>W1610845974
LPXO01000046
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
795
868
+
Gly
CCC
[ENA]
¡û
>W1710518449
FNEA01000004
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
202703
202776
+
Gly
CCC
[ENA]
¡û
>W1710518525
FNEB01000010
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
78217
78290
+
Gly
CCC
[ENA]
¡û
>W1710524249
FNIO01000008
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
56866
56793
-
Gly
CCC
[ENA]
¡û
>W1710531932
FNPX01000020
Alphaproteobacteria
Jannaschia faecimaris [FNPX]
53014
52941
-
Gly
CCC
[ENA]
¡û
>W1710563580
FOPU01000004
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
105443
105370
-
Gly
CCC
[ENA]
¡û
>W1710571591
FOWA01000118
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
201
274
+
Gly
CCC
[ENA]
¡û
>W1710574675
FOYK01000004
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
43427
43354
-
Gly
CCC
[ENA]
¡û
>W1710581748
FPKI01000001
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
113260
113187
-
Gly
CCC
[ENA]
¡û
>W1710585604
FQWM01000001
Alphaproteobacteria
Cognatishimia maritima maritimus [FQWM]
250521
250594
+
Gly
CCC
[ENA]
¡û
>W1710596196
FTMK01000012
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
27078
27005
-
Gly
CCC
[ENA]
¡û
>W1710598805
FTOG01000001
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
226526
226453
-
Gly
CCC
[ENA]
¡û
>W1710608114
FXAQ01000008
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
129055
129128
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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