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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320037 (10 seq.)
>W1710856816
LLZQ01000019
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
41249
41173
-
Arg
CCG
[ENA]
¡û
>W1710856863
LLZR01000018
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
159526
159450
-
Arg
CCG
[ENA]
¡û
>W1711628155
MPOB01000005
Alphaproteobacteria
Oceanibaculum nanhaiense L54-1-50 [MPOB]
1079
1003
-
Arg
CCG
[ENA]
¡û
>PL191001135
CP032828
Alphaproteobacteria
Sphingomonas sp. YZ-8 plasmid:unnamed1 (CP032828)
104281
104357
+
Arg
CCG
[ENA]
¡û
>W1911538463
OMOJ01000005
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
4824
4748
-
Arg
CCG
[ENA]
¡û
>W1911823501
QZVQ01000003
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
292052
291976
-
Arg
CCG
[ENA]
¡û
>W1511398370
JTDN01000002
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
510418
510494
+
Arg
CCG
[ENA]
¡û
>W1610719197
LLZQ01000019
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
41249
41173
-
Arg
CCG
[ENA]
¡û
>W1610719244
LLZR01000018
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
159526
159450
-
Arg
CCG
[ENA]
¡û
>W1710598496
FTOA01000002
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
112153
112077
-
Arg
CCG
[ENA]
¡û
Identical group No.414263 (1 seq.)
>PL191000982
CP032324
Alphaproteobacteria
Azospirillum brasilense MTCC4035 plasmid:p3 (CP032324)
88778
88702
-
Arg
CCG
[ENA]
¡û
Identical group No.551761 (1 seq.)
>PL171001251
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
473841
473916
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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