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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.363913 (4 seq.)
>W1711078711
LSNC01000094
Alphaproteobacteria
Methylorubrum populi [LSNC]
149328
149404
+
Arg
CCT
[ENA]
¡û
>PL171000339
CP001511
Alphaproteobacteria
Methylobacterium extorquens AM1 plasmid:megaplasmid
590707
590631
-
Arg
CCT
[ENA]
¡û
>W121010656
AGJK01000005
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
40328
40404
+
Arg
CCT
[ENA]
¡û
>W1610917621
LSNC01000094
Alphaproteobacteria
Methylorubrum populi [LSNC]
149328
149404
+
Arg
CCT
[ENA]
¡û
Identical group No.381797 (3 seq.)
>PL171001001
CP014688
Alphaproteobacteria
Acetobacter persici TMW2.1084 plasmid:pAC1084_1
266909
266833
-
Arg
CCT
[ENA]
¡û
>W1610624094
LHZC01000053
Alphaproteobacteria
Acetobacter malorum [LHZC]
165858
165934
+
Arg
CCT
[ENA]
¡û
>W1710755212
LHZC01000053
Alphaproteobacteria
Acetobacter malorum [LHZC]
165858
165934
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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