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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456667 (19 seq.)
>W131109463
APHV01000207
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
32971
33046
+
Ala
CGC
[ENA]
¡û
>PL171000661
CP007794
Alphaproteobacteria
Azospirillum brasilense Az39 plasmid:AbAZ39_p1
1443296
1443371
+
Ala
CGC
[ENA]
¡û
>PL171000916
CP012915
Alphaproteobacteria
Azospirillum brasilense Sp 7 plasmid:ABSP7_p1
1395714
1395789
+
Ala
CGC
[ENA]
¡û
>PL171001751
HE577328
Alphaproteobacteria
Azospirillum brasilense Sp245 sp245 plasmid:AZOBR_p1
631460
631535
+
Ala
CGC
[ENA]
¡û
>PL191000296
CP022367
Alphaproteobacteria
Azospirillum sp. TSH58 plasmid:TSH58_p02 (CP022367)
852903
852978
+
Ala
CGC
[ENA]
¡û
>PL191000952
CP032322
Alphaproteobacteria
Azospirillum brasilense MTCC4035 plasmid:p1 (CP032322)
1607959
1607884
-
Ala
CGC
[ENA]
¡û
>PL191001003
CP032340
Alphaproteobacteria
Azospirillum brasilense MTCC4038 plasmid:p1 (CP032340)
736701
736626
-
Ala
CGC
[ENA]
¡û
>PL191001037
CP032346
Alphaproteobacteria
Azospirillum brasilense MTCC4039 plasmid:p1 (CP032346)
1207684
1207759
+
Ala
CGC
[ENA]
¡û
>W141520289
JGVN01000002
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
570932
570857
-
Ala
CGC
[ENA]
¡û
>W1910613073
LGQV01000129
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
1794
1719
-
Ala
CGC
[ENA]
¡û
>W1910613388
LGRK01000014
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
30829
30904
+
Ala
CGC
[ENA]
¡û
>W1911138102
NOWT01000019
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
110185
110110
-
Ala
CGC
[ENA]
¡û
>W1911768805
QXHE01000150
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
6633
6558
-
Ala
CGC
[ENA]
¡û
>W1810222247
POQV01000006
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
294267
294342
+
Ala
CGC
[ENA]
¡û
>W1810223531
POTD01000005
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
294267
294342
+
Ala
CGC
[ENA]
¡û
>W1810226099
POWG01000020
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
104804
104729
-
Ala
CGC
[ENA]
¡û
>W1810692611
QLKQ01000155
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
229
154
-
Ala
CGC
[ENA]
¡û
>W1710626698
JPIR01000041
Alphaproteobacteria
Azospirillum brasilense [JPIR]
231116
231191
+
Ala
CGC
[ENA]
¡û
>W1710626741
JPIS01000014
Alphaproteobacteria
Azospirillum brasilense [JPIS]
85405
85330
-
Ala
CGC
[ENA]
¡û
Identical group No.647583 (1 seq.)
>PL171000338
CP001511
Alphaproteobacteria
Methylobacterium extorquens AM1 plasmid:megaplasmid
765868
765793
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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