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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283188 (104 seq.)
>W1710860762
LMDD01000001
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
100838
100763
-
Ala
CGC
[ENA]
¡û
>W1710860889
LMDF01000009
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
85980
86055
+
Ala
CGC
[ENA]
¡û
>W1710862183
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1373005
1372930
-
Ala
CGC
[ENA]
¡û
>W1710863458
LMFD01000010
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
526212
526287
+
Ala
CGC
[ENA]
¡û
>W1710864137
LMFQ01000020
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
62989
62914
-
Ala
CGC
[ENA]
¡û
>W1710864505
LMFX01000050
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
116040
116115
+
Ala
CGC
[ENA]
¡û
>W1710865995
LMHC01000027
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
234227
234152
-
Ala
CGC
[ENA]
¡û
>W1710866023
LMHD01000022
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
184351
184276
-
Ala
CGC
[ENA]
¡û
>W1710899446
LNIY01000117
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
3892
3817
-
Ala
CGC
[ENA]
¡û
>W1711073903
LSJA01000352
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
30887
30962
+
Ala
CGC
[ENA]
¡û
>W1711074024
LSJD01000165
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
89018
88943
-
Ala
CGC
[ENA]
¡û
>PL171001751
HE577328
Alphaproteobacteria
Azospirillum brasilense Sp245 sp245 plasmid:AZOBR_p1
631460
631535
+
Ala
CGC
[ENA]
¡û
>W131111799
APMP01000005
Alphaproteobacteria
Caulobacter vibrioides OR37 [APMP]
91584
91659
+
Ala
CGC
[ENA]
¡û
>W131160773
AQWW01000156
Alphaproteobacteria
Caulobacter sp. JGI 0001013-D04 [AQWW]
2752
2827
+
Ala
CGC
[ENA]
¡û
>W131226684
AUEO01000010
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
44360
44435
+
Ala
CGC
[ENA]
¡û
>C005354
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
3880543
3880468
-
Ala
CGC
[Ensembl]
¡û
>w018491
AATH01000001
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
310026
309949
-
Ala
CGC
[ENA]
¡û
>WENV180016282
FSUP01000147
[FSUP] metagenome; soil
1590
1665
+
Ala
CGC
[ENA]
¢þ
>WENV180016612
FSVN01000205
[FSVN] metagenome; soil
3503
3578
+
Ala
CGC
[ENA]
¢þ
>WENV180017095
FSWM01000295
[FSWM] metagenome; soil
10151
10076
-
Ala
CGC
[ENA]
¢þ
>WENV180024362
FTIG01268279
[FTIG] metagenome; soil
436
511
+
Ala
CGC
[ENA]
¢þ
>WENV180025973
FTIR01001108
[FTIR] metagenome; soil
2281
2206
-
Ala
CGC
[ENA]
¢þ
>WENV180029293
FTJI01423560
[FTJI] metagenome; soil
21
96
+
Ala
CGC
[ENA]
¢þ
>WENV180030577
FTJN01000387
[FTJN] metagenome; soil
34278
34353
+
Ala
CGC
[ENA]
¢þ
>WENV180033723
FTKL01050583
[FTKL] metagenome; soil
1523
1598
+
Ala
CGC
[ENA]
¢þ
>WENV180034817
FTKR01443186
[FTKR] metagenome; soil
21
96
+
Ala
CGC
[ENA]
¢þ
>WENV180694672
OCZS012555875
[OCZS] soil metagenome; soil
75
150
+
Ala
CGC
[ENA]
¢þ
>WENV181172464
OEIV010717029
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
105
180
+
Ala
CGC
[ENA]
¢þ
>WENV181221714
OFCW01002973
[OFCW] microbial mat metagenome; Microbial Mat
771
696
-
Ala
CGC
[ENA]
¢þ
>WENV181223153
OFDC01002465
[OFDC] hot springs metagenome; Water
3349
3424
+
Ala
CGC
[ENA]
¢þ
>WENV181227230
OFDN01003627
[OFDN] hot springs metagenome; Water
5511
5586
+
Ala
CGC
[ENA]
¢þ
>WENV181295677
OFHJ01000153
[OFHJ] soil metagenome; Clay
28849
28774
-
Ala
CGC
[ENA]
¢þ
>WENV181413899
OGCK01166436
[OGCK] hot springs metagenome; hot spring sediment
351
426
+
Ala
CGC
[ENA]
¢þ
>W141213978
AZSJ01000003
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
1700263
1700188
-
Ala
CGC
[ENA]
¡û
>C08002354
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
5146516
5146591
+
Ala
CGC
[Ensembl]
¡û
>WENV183636487
OOKD01010045
[OOKD] human gut metagenome; Skin biopsy
772
697
-
Ala
CGC
[ENA]
¢þ
>WENV183725350
PJQE01253205
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
170
95
-
Ala
CGC
[ENA]
¢þ
>WENV183731844
PJTT01000253
[PJTT] soil metagenome; Soil (2) enriched on wood chips
53663
53588
-
Ala
CGC
[ENA]
¢þ
>WENV183743346
PJUJ01000594
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
13873
13948
+
Ala
CGC
[ENA]
¢þ
>WENV183743378
PJUJ01000790
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
2925
3000
+
Ala
CGC
[ENA]
¢þ
>WENV183744120
PJUK01000577
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
669
594
-
Ala
CGC
[ENA]
¢þ
>WENV183744320
PJUK01007013
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
17
92
+
Ala
CGC
[ENA]
¢þ
>WENV183744950
PJUL01000878
[PJUL] feces metagenome; Chicken feces enriched on filter paper
16048
16123
+
Ala
CGC
[ENA]
¢þ
>WENV183745018
PJUL01001367
[PJUL] feces metagenome; Chicken feces enriched on filter paper
2925
3000
+
Ala
CGC
[ENA]
¢þ
>WENV170652669
JRYH01013010
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
759
834
+
Ala
CGC
[ENA]
¢þ
>WENV170714482
LNFM01076339
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
535
610
+
Ala
CGC
[ENA]
¢þ
>PL191000952
CP032322
Alphaproteobacteria
Azospirillum brasilense MTCC4035 plasmid:p1 (CP032322)
1607959
1607884
-
Ala
CGC
[ENA]
¡û
>PL191001003
CP032340
Alphaproteobacteria
Azospirillum brasilense MTCC4038 plasmid:p1 (CP032340)
736701
736626
-
Ala
CGC
[ENA]
¡û
>PL191001037
CP032346
Alphaproteobacteria
Azospirillum brasilense MTCC4039 plasmid:p1 (CP032346)
1207684
1207759
+
Ala
CGC
[ENA]
¡û
>C181078841
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
3987299
3987224
-
Ala
CGC
-
¡û
>C181078892
CP023314
Alphaproteobacteria
Caulobacter vibrioides CB1 [CP023314]
4000881
4000806
-
Ala
CGC
-
¡û
>C181078946
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
4007513
4007438
-
Ala
CGC
-
¡û
>C181160477
CP027850
Alphaproteobacteria
Caulobacter segnis TK0059 [CP027850]
4504491
4504416
-
Ala
CGC
-
¡û
>W141520289
JGVN01000002
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
570932
570857
-
Ala
CGC
[ENA]
¡û
>C191040409
CP026100
Alphaproteobacteria
Caulobacter flavus RHGG3 [CP026100]
930657
930732
+
Ala
CGC
-
¡û
>C191114291
CP033875
Alphaproteobacteria
Caulobacter sp. FWC26 [CP033875]
4384084
4384009
-
Ala
CGC
-
¡û
>C191119776
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
3900267
3900192
-
Ala
CGC
-
¡û
>W141779486
JONW01000006
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
276421
276346
-
Ala
CGC
[ENA]
¡û
>W141815969
JQJN01000013
Alphaproteobacteria
Caulobacter henricii [JQJN]
137916
137841
-
Ala
CGC
[ENA]
¡û
>W141816062
JQJP01000010
Alphaproteobacteria
Caulobacter henricii [JQJP]
147755
147680
-
Ala
CGC
[ENA]
¡û
>W141819045
JQLZ01000006
Alphaproteobacteria
Caulobacter henricii [JQLZ]
26679
26604
-
Ala
CGC
[ENA]
¡û
>C09103138
CP001340
Alphaproteobacteria
Caulobacter vibrioides NA1000 [CP001340]
3906525
3906450
-
Ala
CGC
[Ensembl]
¡û
>W1910743282
MHXO01000298
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
7946
8021
+
Ala
CGC
[ENA]
¡û
>W1910990824
NKUF01000012
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
65205
65280
+
Ala
CGC
[ENA]
¡û
>W1911138102
NOWT01000019
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
110185
110110
-
Ala
CGC
[ENA]
¡û
>W1911708738
QOZR01000006
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
293109
293184
+
Ala
CGC
[ENA]
¡û
>W1911708777
QOZS01000025
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60015 [QOZS]
17097
17172
+
Ala
CGC
[ENA]
¡û
>W1810069293
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
64549
64624
+
Ala
CGC
[ENA]
¡û
>W1810069346
PEBG01000001
Alphaproteobacteria
Caulobacter sp. FWC26 [PEBG]
1041386
1041461
+
Ala
CGC
[ENA]
¡û
>W1810073458
PEGF01000001
Alphaproteobacteria
Caulobacter sp. X [PEGF]
2292334
2292259
-
Ala
CGC
[ENA]
¡û
>W1810073518
PEGG01000166
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
3105
3180
+
Ala
CGC
[ENA]
¡û
>W1810073561
PEGH01000017
Alphaproteobacteria
Caulobacter sp. BP25 [PEGH]
423054
422979
-
Ala
CGC
[ENA]
¡û
>W1810177592
PJRQ01000037
Alphaproteobacteria
Caulobacter flavus CGMCC1 15093 [PJRQ]
21882
21957
+
Ala
CGC
[ENA]
¡û
>W1810177642
PJRR01000013
Alphaproteobacteria
Caulobacter vibrioides DSM 9893 [PJRR]
149092
149017
-
Ala
CGC
[ENA]
¡û
>W1810177680
PJRS01000011
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
39753
39678
-
Ala
CGC
[ENA]
¡û
>W1810474457
QAII01000002
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
15826
15751
-
Ala
CGC
[ENA]
¡û
>W1810475010
QAIR01000158
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
4757
4682
-
Ala
CGC
[ENA]
¡û
>W1810543623
QDKO01000010
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
42904
42829
-
Ala
CGC
[ENA]
¡û
>W1810543714
QDKP01000060
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
72781
72856
+
Ala
CGC
[ENA]
¡û
>W1810543761
QDKQ01000064
Alphaproteobacteria
Caulobacter endophyticus 774 [QDKQ]
36986
37061
+
Ala
CGC
[ENA]
¡û
>W1810625694
QHJY01000048
Alphaproteobacteria
Caulobacter sp. D5 [QHJY]
2785
2860
+
Ala
CGC
[ENA]
¡û
>W1810625723
QHJZ01000016
Alphaproteobacteria
Caulobacter sp. D4A [QHJZ]
5168
5243
+
Ala
CGC
[ENA]
¡û
>ENV09003366
ADGO01025359
Compost metagenome contig00001
303
228
-
Ala
CGC
[ENA]
¡û
>ENV09003773
ADGO01170777
Compost metagenome contig00001
428
353
-
Ala
CGC
[ENA]
¡û
>W10109882
ADBN01000003
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
40277
40352
+
Ala
CGC
[ENA]
¡û
>W11112319
ADBN01000003
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
40277
40352
+
Ala
CGC
[ENA]
¡û
>W1511432234
JUGJ01000002
Alphaproteobacteria
Caulobacter sp. OV484 [JUGJ]
123827
123752
-
Ala
CGC
[ENA]
¡û
>C121001850
CP002008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [CP002008]
4504632
4504557
-
Ala
CGC
[Ensembl]
¡û
>C161049355
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
3457372
3457447
+
Ala
CGC
[Ensembl]
¡û
>W121009559
AGEZ01000035
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
5095
5020
-
Ala
CGC
[ENA]
¡û
>W121086755
AKKF01000126
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
22772
22697
-
Ala
CGC
[ENA]
¡û
>W1610723108
LMDD01000001
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
100838
100763
-
Ala
CGC
[ENA]
¡û
>W1610723235
LMDF01000009
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
85980
86055
+
Ala
CGC
[ENA]
¡û
>W1610724529
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1373005
1372930
-
Ala
CGC
[ENA]
¡û
>W1610725804
LMFD01000010
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
526212
526287
+
Ala
CGC
[ENA]
¡û
>W1610726483
LMFQ01000020
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
62989
62914
-
Ala
CGC
[ENA]
¡û
>W1610726851
LMFX01000050
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
116040
116115
+
Ala
CGC
[ENA]
¡û
>W1610728341
LMHC01000027
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
234227
234152
-
Ala
CGC
[ENA]
¡û
>W1610728369
LMHD01000022
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
184351
184276
-
Ala
CGC
[ENA]
¡û
>W1610759849
LNIY01000117
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
3892
3817
-
Ala
CGC
[ENA]
¡û
>W1610912299
LSID01000142
Actinomycetota
Dermacoccus sp. CCH12-B7 [LSID]
41028
41103
+
Ala
CGC
[ENA]
¡û
>W1610913208
LSJA01000352
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
30887
30962
+
Ala
CGC
[ENA]
¡û
>W1610913329
LSJD01000165
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
89018
88943
-
Ala
CGC
[ENA]
¡û
>W1710565839
FORN01000011
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
100900
100825
-
Ala
CGC
[ENA]
¡û
Identical group No.284277 (56 seq.)
>W1710853412
LLWQ01000163
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
94455
94530
+
Ala
CGC
[ENA]
¡û
>W1710889742
LNBC01000012
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
65715
65640
-
Ala
CGC
[ENA]
¡û
>W1712104737
NIPZ01000007
Alphaproteobacteria
Paracoccus yeei [NIPZ]
64590
64665
+
Ala
CGC
[ENA]
¡û
>C171107686
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
1298126
1298051
-
Ala
CGC
-
¡û
>C171110785
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
996868
996793
-
Ala
CGC
-
¡û
>W131158913
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
981910
981835
-
Ala
CGC
[ENA]
¡û
>C016025
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
2341807
2341732
-
Ala
CGC
[Ensembl]
¡û
>W141277305
JAEM01000011
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
28038
28113
+
Ala
CGC
[ENA]
¡û
>W141279574
JAGK01000007
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
28518
28593
+
Ala
CGC
[ENA]
¡û
>WENV183733741
PJTY01019734
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
514
439
-
Ala
CGC
[ENA]
¢þ
>WENV170564868
CZPY01000012
[CZPY] metagenome; PAHs-polluted Soil
65715
65640
-
Ala
CGC
[ENA]
¢þ
>PL191000054
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
2341807
2341732
-
Ala
CGC
[Ensembl]
¡û
>C181099802
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
874403
874328
-
Ala
CGC
-
¡û
>C181119682
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
1957762
1957687
-
Ala
CGC
-
¡û
>C181190847
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
1289950
1289875
-
Ala
CGC
-
¡û
>C181203406
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
2845537
2845462
-
Ala
CGC
-
¡û
>C191073590
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2739776
2739701
-
Ala
CGC
-
¡û
>C191134391
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
1083096
1083021
-
Ala
CGC
-
¡û
>W141558864
JHWH01000003
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
87557
87482
-
Ala
CGC
[ENA]
¡û
>W09103061
AAIT01000008
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
191128
191053
-
Ala
CGC
[ENA]
¡û
>C141006337
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
3500809
3500734
-
Ala
CGC
[Ensembl]
¡û
>W1910547086
FZNM01000011
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
27634
27559
-
Ala
CGC
[ENA]
¡û
>W1911245329
NSJZ01000004
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
126856
126781
-
Ala
CGC
[ENA]
¡û
>W1911397929
NWMQ01000019
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
14516
14441
-
Ala
CGC
[ENA]
¡û
>W1911698509
QNRC01000025
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
59879
59804
-
Ala
CGC
[ENA]
¡û
>W1911705504
QOKZ01000002
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
192407
192482
+
Ala
CGC
[ENA]
¡û
>W1911810946
QZCG01000001
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
493389
493314
-
Ala
CGC
[ENA]
¡û
>W1911813266
QZEW01000156
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
6967
6892
-
Ala
CGC
[ENA]
¡û
>W1810235972
PPGA01000003
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
256602
256677
+
Ala
CGC
[ENA]
¡û
>W1810385260
PXNQ01000003
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
331350
331275
-
Ala
CGC
[ENA]
¡û
>W1810585326
QFCQ01000080
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
9095
9170
+
Ala
CGC
[ENA]
¡û
>W1810684493
QKYL01000126
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
7000
6925
-
Ala
CGC
[ENA]
¡û
>W1810697105
QLUV01000001
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
443057
442982
-
Ala
CGC
[ENA]
¡û
>W1810750726
QOZU01000004
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
61356
61281
-
Ala
CGC
[ENA]
¡û
>W1810759481
QPJL01000011
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
138106
138181
+
Ala
CGC
[ENA]
¡û
>C11117049
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2677925
2677850
-
Ala
CGC
[Ensembl]
¡û
>W1511348578
JRKN01000055
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
441
516
+
Ala
CGC
[ENA]
¡û
>W1511348655
JRKP01000057
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
19003
19078
+
Ala
CGC
[ENA]
¡û
>W1511348682
JRKQ01000012
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
26040
26115
+
Ala
CGC
[ENA]
¡û
>W1511348734
JRKR01000022
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
11041
10966
-
Ala
CGC
[ENA]
¡û
>W1511348781
JRKS01000009
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
11212
11287
+
Ala
CGC
[ENA]
¡û
>W1511348821
JRKT01000016
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
25207
25132
-
Ala
CGC
[ENA]
¡û
>W11143052
AEPN01000025
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
47757
47832
+
Ala
CGC
[ENA]
¡û
>W1610716536
LLWQ01000163
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
94455
94530
+
Ala
CGC
[ENA]
¡û
>W1610750120
LNBC01000012
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
65715
65640
-
Ala
CGC
[ENA]
¡û
>W1710518457
FNEA01000005
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
192617
192542
-
Ala
CGC
[ENA]
¡û
>W1710521156
FNGE01000001
Alphaproteobacteria
Paracoccus chinensis [FNGE]
168897
168822
-
Ala
CGC
[ENA]
¡û
>W1710528212
FNNA01000002
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
948483
948558
+
Ala
CGC
[ENA]
¡û
>W1710540955
FNXG01000003
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
161283
161208
-
Ala
CGC
[ENA]
¡û
>W1710555572
FOJO01000049
Alphaproteobacteria
Paracoccus halophilus [FOJO]
10215
10140
-
Ala
CGC
[ENA]
¡û
>W1710563597
FOPU01000029
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
48614
48689
+
Ala
CGC
[ENA]
¡û
>W1710571577
FOWA01000039
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
1126
1051
-
Ala
CGC
[ENA]
¡û
>W1710574678
FOYK01000005
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
190528
190453
-
Ala
CGC
[ENA]
¡û
>W1710592388
FRCK01000007
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
603
528
-
Ala
CGC
[ENA]
¡û
>W1710599521
FTOU01000001
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
694759
694834
+
Ala
CGC
[ENA]
¡û
>W1710608122
FXAQ01000012
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
110944
111019
+
Ala
CGC
[ENA]
¡û
Identical group No.320170 (56 seq.)
>W1710861918
LMDZ01000006
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
247740
247815
+
Ala
CGC
[ENA]
¡û
>W1710867702
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
1296565
1296490
-
Ala
CGC
[ENA]
¡û
>W131109463
APHV01000207
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
32971
33046
+
Ala
CGC
[ENA]
¡û
>W1711074216
LSJI01000026
Alphaproteobacteria
Phenylobacterium sp. CCH9-H3 [LSJI]
804
879
+
Ala
CGC
[ENA]
¡û
>W1711075170
LSKE01000090
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
13396
13321
-
Ala
CGC
[ENA]
¡û
>W1711386104
MEEX01000011
Alphaproteobacteria
Phenylobacterium sp. SCN 70-31 [MEEX]
103821
103746
-
Ala
CGC
[ENA]
¡û
>W1711573745
MNDV01000308
Alphaproteobacteria
Alphaproteobacteria bacterium 13_2_20CM_2_64_7 [MNDV]
3312
3387
+
Ala
CGC
[ENA]
¡û
>W1711573746
MNDV01000310
Alphaproteobacteria
Alphaproteobacteria bacterium 13_2_20CM_2_64_7 [MNDV]
18751
18826
+
Ala
CGC
[ENA]
¡û
>PL171000661
CP007794
Alphaproteobacteria
Azospirillum brasilense Az39 plasmid:AbAZ39_p1
1443296
1443371
+
Ala
CGC
[ENA]
¡û
>PL171000916
CP012915
Alphaproteobacteria
Azospirillum brasilense Sp 7 plasmid:ABSP7_p1
1395714
1395789
+
Ala
CGC
[ENA]
¡û
>WENV180017706
FSXN01000956
[FSXN] metagenome; soil
2713
2638
-
Ala
CGC
[ENA]
¢þ
>WENV180017713
FSXN01001069
[FSXN] metagenome; soil
1422
1497
+
Ala
CGC
[ENA]
¢þ
>WENV180017718
FSXN01001183
[FSXN] metagenome; soil
707
632
-
Ala
CGC
[ENA]
¢þ
>WENV180017908
FSXV01000045
[FSXV] metagenome; soil
21153
21228
+
Ala
CGC
[ENA]
¢þ
>WENV180018718
FTAI01000050
[FTAI] metagenome; soil
1491
1566
+
Ala
CGC
[ENA]
¢þ
>WENV180018743
FTAI01000668
[FTAI] metagenome; soil
1244
1319
+
Ala
CGC
[ENA]
¢þ
>WENV180022249
FTFU01002375
[FTFU] metagenome; soil
1747
1672
-
Ala
CGC
[ENA]
¢þ
>WENV180023980
FTIF01005401
[FTIF] metagenome; soil
1366
1441
+
Ala
CGC
[ENA]
¢þ
>WENV180026322
FTIT01001502
[FTIT] metagenome; soil
8528
8603
+
Ala
CGC
[ENA]
¢þ
>WENV180026656
FTIU01011282
[FTIU] metagenome; soil
290
365
+
Ala
CGC
[ENA]
¢þ
>WENV180026872
FTIU01597232
[FTIU] metagenome; soil
3703
3628
-
Ala
CGC
[ENA]
¢þ
>WENV180029485
FTJK01002863
[FTJK] metagenome; soil
2512
2437
-
Ala
CGC
[ENA]
¢þ
>WENV180029763
FTJL01004031
[FTJL] metagenome; soil
1450
1375
-
Ala
CGC
[ENA]
¢þ
>WENV180029771
FTJL01004541
[FTJL] metagenome; soil
899
824
-
Ala
CGC
[ENA]
¢þ
>WENV180030916
FTJN01461628
[FTJN] metagenome; soil
1
76
+
Ala
CGC
[ENA]
¢þ
>WENV180031676
FTJQ01143658
[FTJQ] metagenome; soil
213
288
+
Ala
CGC
[ENA]
¢þ
>WENV180032775
FTKD01000789
[FTKD] metagenome; soil
7085
7010
-
Ala
CGC
[ENA]
¢þ
>WENV180308457
OBJR01010756
[OBJR] soil metagenome; soil
100
25
-
Ala
CGC
[ENA]
¢þ
>WENV180352117
OBLQ010171431
[OBLQ] soil metagenome; soil
8
83
+
Ala
CGC
[ENA]
¢þ
>WENV181162371
OEIN01098822
[OEIN] soil metagenome; soil
115
190
+
Ala
CGC
[ENA]
¢þ
>WENV181165493
OEIS01008118
[OEIS] soil metagenome; soil
439
514
+
Ala
CGC
[ENA]
¢þ
>WENV181413834
OGCK01149944
[OGCK] hot springs metagenome; hot spring sediment
291
366
+
Ala
CGC
[ENA]
¢þ
>C08007899
CP000747
Alphaproteobacteria
Phenylobacterium zucineum HLK1 [CP000747]
3840160
3840088
-
Ala
CGC
[Ensembl]
¡û
>WENV170707401
LNAP01019580
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2968
2893
-
Ala
CGC
[ENA]
¢þ
>WENV170707541
LNAP01024602
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2973
2898
-
Ala
CGC
[ENA]
¢þ
>PL191000296
CP022367
Alphaproteobacteria
Azospirillum sp. TSH58 plasmid:TSH58_p02 (CP022367)
852903
852978
+
Ala
CGC
[ENA]
¡û
>C181097383
CP024201
Alphaproteobacteria
Caulobacter mirabilis FWC 38 [CP024201]
97758
97683
-
Ala
CGC
-
¡û
>W141807518
JPOM01000001
Alphaproteobacteria
Caulobacteraceae bacterium PMMR1 [JPOM]
1536652
1536577
-
Ala
CGC
[ENA]
¡û
>W1910613073
LGQV01000129
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
1794
1719
-
Ala
CGC
[ENA]
¡û
>W1910613388
LGRK01000014
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
30829
30904
+
Ala
CGC
[ENA]
¡û
>W1910743227
MHXN01000014
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 [MHXN]
344464
344539
+
Ala
CGC
[ENA]
¡û
>W1911768805
QXHE01000150
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
6633
6558
-
Ala
CGC
[ENA]
¡û
>W1810222247
POQV01000006
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
294267
294342
+
Ala
CGC
[ENA]
¡û
>W1810223531
POTD01000005
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
294267
294342
+
Ala
CGC
[ENA]
¡û
>W1810226099
POWG01000020
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
104804
104729
-
Ala
CGC
[ENA]
¡û
>W1810594042
QFYQ01000001
Alphaproteobacteria
Phenylobacterium soli LX32 [QFYQ]
377392
377467
+
Ala
CGC
[ENA]
¡û
>W1810594101
QFYR01000001
Alphaproteobacteria
Phenylobacterium deserti YIM 73061 [QFYR]
837718
837643
-
Ala
CGC
[ENA]
¡û
>W1810594163
QFYS01000008
Alphaproteobacteria
Phenylobacterium kunshanense BUT-10 [QFYS]
40625
40550
-
Ala
CGC
[ENA]
¡û
>W1810692611
QLKQ01000155
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
229
154
-
Ala
CGC
[ENA]
¡û
>W1510639847
CVJQ01000001
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
823952
823877
-
Ala
CGC
[ENA]
¡û
>W1610724264
LMDZ01000006
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
247740
247815
+
Ala
CGC
[ENA]
¡û
>W1610730048
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
1296565
1296490
-
Ala
CGC
[ENA]
¡û
>W1610913521
LSJI01000026
Alphaproteobacteria
Phenylobacterium sp. CCH9-H3 [LSJI]
804
879
+
Ala
CGC
[ENA]
¡û
>W1610914475
LSKE01000090
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
13396
13321
-
Ala
CGC
[ENA]
¡û
>W1710626698
JPIR01000041
Alphaproteobacteria
Azospirillum brasilense [JPIR]
231116
231191
+
Ala
CGC
[ENA]
¡û
>W1710626741
JPIS01000014
Alphaproteobacteria
Azospirillum brasilense [JPIS]
85405
85330
-
Ala
CGC
[ENA]
¡û
Identical group No.344569 (4 seq.)
>W1711078707
LSNC01000084
Alphaproteobacteria
Methylorubrum populi [LSNC]
4965
4890
-
Ala
CGC
[ENA]
¡û
>PL171000338
CP001511
Alphaproteobacteria
Methylobacterium extorquens AM1 plasmid:megaplasmid
765868
765793
-
Ala
CGC
[ENA]
¡û
>W121010696
AGJK01000185
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
9034
8959
-
Ala
CGC
[ENA]
¡û
>W1610917617
LSNC01000084
Alphaproteobacteria
Methylorubrum populi [LSNC]
4965
4890
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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