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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = GAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126689 (10 seq.)
>W131109458
APHV01000188
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
5233
5147
-
Leu
GAG
[ENA]
¡û
>W131109478
APHV01000335
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
7260
7174
-
Leu
GAG
[ENA]
¡û
>PL171000951
CP012917
Alphaproteobacteria
Azospirillum brasilense Sp 7 plasmid:ABSP7_p3
501093
501007
-
Leu
GAG
[ENA]
¡û
>PL191001022
CP032343
Alphaproteobacteria
Azospirillum brasilense MTCC4038 plasmid:p4 (CP032343)
227137
227223
+
Leu
GAG
[ENA]
¡û
>W1910613431
LGRK01000107
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
24693
24779
+
Leu
GAG
[ENA]
¡û
>W1911768762
QXHE01000024
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
46854
46940
+
Leu
GAG
[ENA]
¡û
>W1810222278
POQV01000016
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
82715
82801
+
Leu
GAG
[ENA]
¡û
>W1810223563
POTD01000017
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
82715
82801
+
Leu
GAG
[ENA]
¡û
>W1710626716
JPIR01000076
Alphaproteobacteria
Azospirillum brasilense [JPIR]
54089
54175
+
Leu
GAG
[ENA]
¡û
>W1710626732
JPIS01000010
Alphaproteobacteria
Azospirillum brasilense [JPIS]
91722
91636
-
Leu
GAG
[ENA]
¡û
Identical group No.166198 (1 seq.)
>PL171001243
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
471147
471232
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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