tRNA genes clustered and arranged according to each identical group

Alphaproteobacteria

Anticodon = GGA

HIT: 3 Group(s).

Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision
Identical group No.24862 (1 seq.)
>PL171001245	CP016463	Alphaproteobacteria	Bosea sp. RAC05 plasmid:pBSY19_1	471341	471430	+	Ser	GGA	[ENA]	○
Identical group No.46198 (54 seq.)
>W1710853427	LLWQ01000217	Alphaproteobacteria	Paracoccus sp. MKU1 [LLWQ]	1855	1766	-	Ser	GGA	[ENA]	○
>W1710889757	LNBC01000030	Alphaproteobacteria	Paracoccus aminovorans [LNBC]	123451	123540	+	Ser	GGA	[ENA]	○
>W1712104736	NIPZ01000003	Alphaproteobacteria	Paracoccus yeei [NIPZ]	3404	3493	+	Ser	GGA	[ENA]	○
>C171107693	CP020442	Alphaproteobacteria	Paracoccus yeei FDAARGOS_252 [CP020442]	675871	675782	-	Ser	GGA	-	○
>C171110798	CP020612	Alphaproteobacteria	Paracoccus contaminans RKI 16-01929T [CP020612]	72716	72627	-	Ser	GGA	-	○
>W131158919	AQUO01000001	Alphaproteobacteria	Paracoccus sp. N5 [AQUO]	637412	637323	-	Ser	GGA	[ENA]	○
>C016012	CP000489	Alphaproteobacteria	Paracoccus denitrificans PD1222 [CP000489, CP000490]	948593	948682	+	Ser	GGA	[Ensembl]	○
>W141216624	AZVA01000005	Alphaproteobacteria	Paracoccus sp. J55 [AZVA]	173424	173513	+	Ser	GGA	[ENA]	○
>W141277320	JAEM01000043	Alphaproteobacteria	Paracoccus pantotrophus J46 [JAEM]	9893	9804	-	Ser	GGA	[ENA]	○
>W141277354	JAEN01000009	Alphaproteobacteria	Paracoccus sp. J39 [JAEN]	39037	39126	+	Ser	GGA	[ENA]	○
>W141279584	JAGK01000020	Alphaproteobacteria	Paracoccus pantotrophus J40 [JAGK]	24162	24073	-	Ser	GGA	[ENA]	○
>WENV183729327	PJTQ01022258	[PJTQ] soil metagenome; Soil (3) enriched on wood chips		760	849	+	Ser	GGA	[ENA]	◯
>WENV170564883	CZPY01000030	[CZPY] metagenome; PAHs-polluted Soil		123451	123540	+	Ser	GGA	[ENA]	◯
>PL191000041	CP000489	Alphaproteobacteria	Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)	948593	948682	+	Ser	GGA	[Ensembl]	○
>C181099810	CP024422	Alphaproteobacteria	Paracoccus yeei TT13 [CP024422]	181238	181149	-	Ser	GGA	-	○
>C181119687	CP025583	Alphaproteobacteria	Paracoccus jeotgali CBA4604 [CP025583]	1377143	1377054	-	Ser	GGA	-	○
>C181190855	CP030239	Alphaproteobacteria	Paracoccus mutanolyticus RSP-02 [CP030239]	669323	669234	-	Ser	GGA	-	○
>C181203413	LN832559	Alphaproteobacteria	Paracoccus aminovorans [LN832559]	2296258	2296169	-	Ser	GGA	-	○
>C191073598	CP031078	Alphaproteobacteria	Paracoccus yeei CCUG 32053 [CP031078]	2184486	2184397	-	Ser	GGA	-	○
>W09103073	AAIT01000027	Alphaproteobacteria	Paracoccus denitrificans PD1222 [AAIT]	22635	22546	-	Ser	GGA	[ENA]	○
>C191134383	CP035090	Alphaproteobacteria	Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]	2542992	2543081	+	Ser	GGA	-	○
>W141558887	JHWH01000038	Alphaproteobacteria	Paracoccus yeei ATCC BAA-599 [JHWH]	15933	16022	+	Ser	GGA	[ENA]	○
>W1911245319	NSJZ01000002	Alphaproteobacteria	Paracoccus salipaludis WN007 [NSJZ]	324211	324300	+	Ser	GGA	[ENA]	○
>W1810236002	PPGA01000025	Alphaproteobacteria	Paracoccus denitrificans ISTOD1 [PPGA]	18036	18125	+	Ser	GGA	[ENA]	○
>W1810585305	QFCQ01000008	Alphaproteobacteria	Paracoccus thiocyanatus SST [QFCQ]	3442	3531	+	Ser	GGA	[ENA]	○
>W1810697115	QLUV01000003	Alphaproteobacteria	Paracoccus endophyticus SYSUP0003 [QLUV]	37662	37573	-	Ser	GGA	[ENA]	○
>W1810750729	QOZU01000005	Alphaproteobacteria	Paracoccus pantotrophus KS1 [QOZU]	34731	34642	-	Ser	GGA	[ENA]	○
>W1810762340	QPML01000104	Alphaproteobacteria	Paracoccus versutus MAL 1HM19 [QPML]	11472	11383	-	Ser	GGA	[ENA]	○
>W1810862253	QTUJ01000002	Alphaproteobacteria	Paracoccus versutus DSM 17099 [QTUJ]	908029	908118	+	Ser	GGA	[ENA]	○
>W1810884843	QUMX01000005	Alphaproteobacteria	Paracoccus versutus DSM 582 [QUMX]	28061	28150	+	Ser	GGA	[ENA]	○
>C11117031	CP002897	Alphaproteobacteria	Paracoccus denitrificans [CP002897]	755260	755349	+	Ser	GGA	[Ensembl]	○
>W1511348575	JRKN01000048	Alphaproteobacteria	Paracoccus halophilus JCM 14014 [JRKN]	14676	14765	+	Ser	GGA	[ENA]	○
>W1511348594	JRKO01000007	Alphaproteobacteria	Paracoccus versutus DSM 582 [JRKO]	108658	108569	-	Ser	GGA	[ENA]	○
>W1511348641	JRKP01000012	Alphaproteobacteria	Paracoccus sanguinis 39524 [JRKP]	20358	20447	+	Ser	GGA	[ENA]	○
>W1511348689	JRKQ01000024	Alphaproteobacteria	Paracoccus sanguinis 5503 [JRKQ]	8323	8412	+	Ser	GGA	[ENA]	○
>W1511348757	JRKR01000131	Alphaproteobacteria	Paracoccus sanguinis 10990 [JRKR]	7686	7775	+	Ser	GGA	[ENA]	○
>W1511348766	JRKS01000001	Alphaproteobacteria	Paracoccus sphaerophysae HAMBI 3106 [JRKS]	166160	166249	+	Ser	GGA	[ENA]	○
>W1511348838	JRKT01000052	Alphaproteobacteria	Paracoccus sanguinis 4681 [JRKT]	14295	14206	-	Ser	GGA	[ENA]	○
>W11143062	AEPN01000058	Alphaproteobacteria	Paracoccus sp. TRP [AEPN]	3681	3592	-	Ser	GGA	[ENA]	○
>W1610049828	BBFH01000159	Alphaproteobacteria	Paracoccus denitrificans JCM 21484 [BBFH]	2948	3037	+	Ser	GGA	[ENA]	○
>W1610716551	LLWQ01000217	Alphaproteobacteria	Paracoccus sp. MKU1 [LLWQ]	1855	1766	-	Ser	GGA	[ENA]	○
>W1610750135	LNBC01000030	Alphaproteobacteria	Paracoccus aminovorans [LNBC]	123451	123540	+	Ser	GGA	[ENA]	○
>W1710046227	BBFH01000159	Alphaproteobacteria	Paracoccus denitrificans JCM 21484 [BBFH]	2948	3037	+	Ser	GGA	[ENA]	○
>W1710513620	FNAH01000005	Alphaproteobacteria	Paracoccus isoporae [FNAH]	216237	216326	+	Ser	GGA	[ENA]	○
>W1710518480	FNEA01000044	Alphaproteobacteria	Paracoccus denitrificans [FNEA]	21731	21820	+	Ser	GGA	[ENA]	○
>W1710521172	FNGE01000005	Alphaproteobacteria	Paracoccus chinensis [FNGE]	2348	2259	-	Ser	GGA	[ENA]	○
>W1710528221	FNNA01000003	Alphaproteobacteria	Paracoccus sanguinis [FNNA]	20326	20415	+	Ser	GGA	[ENA]	○
>W1710555571	FOJO01000045	Alphaproteobacteria	Paracoccus halophilus [FOJO]	1518	1429	-	Ser	GGA	[ENA]	○
>W1710563592	FOPU01000023	Alphaproteobacteria	Paracoccus aminovorans [FOPU]	55259	55348	+	Ser	GGA	[ENA]	○
>W1710571587	FOWA01000066	Alphaproteobacteria	Paracoccus pantotrophus [FOWA]	690	601	-	Ser	GGA	[ENA]	○
>W1710574701	FOYK01000044	Alphaproteobacteria	Paracoccus denitrificans [FOYK]	5822	5733	-	Ser	GGA	[ENA]	○
>W1710581766	FPKI01000010	Alphaproteobacteria	Paracoccus pantotrophus [FPKI]	14316	14227	-	Ser	GGA	[ENA]	○
>W1710596189	FTMK01000007	Alphaproteobacteria	Paracoccus thiocyanatus [FTMK]	108937	108848	-	Ser	GGA	[ENA]	○
>W1710608136	FXAQ01000044	Alphaproteobacteria	Paracoccus sp. J56 [FXAQ]	13686	13775	+	Ser	GGA	[ENA]	○
Identical group No.49404 (69 seq.)
>W1711294767	MABH01000137	Alphaproteobacteria	Cereibacter johrii [MABH]	22706	22795	+	Ser	GGA	[ENA]	○
>W1711385819	MEES01000002	Alphaproteobacteria	Paracoccus sp. SCN 68-21 [MEES]	708	619	-	Ser	GGA	[ENA]	○
>W131058661	ANFS01000044	Alphaproteobacteria	Rhodobacter sp. AKP1 [ANFS]	88210	88121	-	Ser	GGA	[ENA]	○
>W131155852	AQOX01000003	Alphaproteobacteria	Limimaricola hongkongensis DSM 17492 [AQOX]	364150	364239	+	Ser	GGA	[ENA]	○
>W131216070	ATVN01000009	Alphaproteobacteria	Pseudorhodobacter ferrugineus DSM 5888 [ATVN]	149301	149390	+	Ser	GGA	[ENA]	○
>C171037005	CP015210	Alphaproteobacteria	Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]	1942458	1942369	-	Ser	GGA	-	○
>C019230	CP000143	Alphaproteobacteria	Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]	1942528	1942439	-	Ser	GGA	[Ensembl]	○
>C019277	CP000661	Alphaproteobacteria	Cereibacter sphaeroides [CP000661]	1850753	1850842	+	Ser	GGA	[Ensembl]	○
>C019320	CP000577	Alphaproteobacteria	Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]	1974842	1974753	-	Ser	GGA	[Ensembl]	○
>WENV180231738	OBCO01000001	[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D		263595	263506	-	Ser	GGA	[ENA]	◯
>WENV180232712	OBCP01000001	[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D		505711	505622	-	Ser	GGA	[ENA]	◯
>w001254	AAAE01000130	Alphaproteobacteria	Cereibacter sphaeroides [AAAE]	5627	5536	-	Ser	GGA	[ENA]	○
>WENV180569513	OCLR01000122	[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D		98341	98252	-	Ser	GGA	[ENA]	◯
>WENV180570444	OCLS01000119	[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D		123087	122998	-	Ser	GGA	[ENA]	◯
>WENV180571095	OCLT01000002	[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D		263484	263395	-	Ser	GGA	[ENA]	◯
>WENV180573357	OCLW01000006	[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D		233735	233824	+	Ser	GGA	[ENA]	◯
>WENV180639421	OCRL01000002	[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D		263484	263395	-	Ser	GGA	[ENA]	◯
>WENV180640324	OCRM01000001	[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D		505711	505622	-	Ser	GGA	[ENA]	◯
>W141063313	APGJ01000004	Alphaproteobacteria	Limimaricola hongkongensis DSM 17492 [APGJ]	365031	365120	+	Ser	GGA	[ENA]	○
>W141230432	BATB01000015	Alphaproteobacteria	Limimaricola cinnabarinus LL-001 [BATB]	18255	18344	+	Ser	GGA	[ENA]	○
>WENV170014614	AYSL01000884	[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal		273	362	+	Ser	GGA	[ENA]	◯
>PL191001397	CP039965	Alphaproteobacteria	Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)	1249356	1249445	+	Ser	GGA	[ENA]	○
>C181017236	CP015287	Alphaproteobacteria	Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]	1942445	1942356	-	Ser	GGA	-	○
>C181191121	CP030271	Alphaproteobacteria	Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]	1942465	1942376	-	Ser	GGA	-	○
>C181194171	CP030918	Alphaproteobacteria	Paracoccus suum SC2-6 [CP030918]	2281676	2281765	+	Ser	GGA	-	○
>C191079654	CP031750	Alphaproteobacteria	Cereibacter sphaeroides EBL0706 [CP031750, CP031751]	1607747	1607836	+	Ser	GGA	-	○
>W09104750	AAME01000075	Alphaproteobacteria	Cereibacter sphaeroides ATCC 17025 [AAME]	1407	1318	-	Ser	GGA	[ENA]	○
>W09104770	AAMF01000002	Alphaproteobacteria	Cereibacter sphaeroides ATCC 17029 [AAMF]	706961	707050	+	Ser	GGA	[ENA]	○
>C191151000	CP036419	Alphaproteobacteria	Cereibacter sphaeroides HJ [CP036419, CP036420]	1026717	1026806	+	Ser	GGA	-	○
>C191159590	CP038439	Alphaproteobacteria	Paracoccus liaowanqingii 2251 [CP038439]	2316443	2316354	-	Ser	GGA	-	○
>W1910548876	FZOV01000005	Alphaproteobacteria	Cereibacter sphaeroides DSM 18937 [FZOV]	233813	233902	+	Ser	GGA	[ENA]	○
>W1910549888	FZQB01000015	Alphaproteobacteria	Paracoccus seriniphilus DSM 14827 [FZQB]	315	226	-	Ser	GGA	[ENA]	○
>C09109068	CP001150	Alphaproteobacteria	Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]	1574401	1574312	-	Ser	GGA	[Ensembl]	○
>W1911189707	NQWH01000010	Alphaproteobacteria	Limimaricola cinnabarinus XM1 [NQWH]	122832	122743	-	Ser	GGA	[ENA]	○
>W1911491944	OAOQ01000026	Alphaproteobacteria	Cereibacter ovatus JA234 [OAOQ]	731	820	+	Ser	GGA	[ENA]	○
>W1911698522	QNRC01000057	Alphaproteobacteria	Paracoccus siganidrum M26 [QNRC]	472	383	-	Ser	GGA	[ENA]	○
>W1911705518	QOKZ01000005	Alphaproteobacteria	Paracoccus alkanivorans 4月2日 [QOKZ]	312886	312797	-	Ser	GGA	[ENA]	○
>W1911718105	QQVY01000005	Alphaproteobacteria	Paracoccus sp. JM45 [QQVY]	182024	182113	+	Ser	GGA	[ENA]	○
>W1911749446	QWGP01000007	Alphaproteobacteria	Cereibacter sphaeroides FY [QWGP]	2570	2481	-	Ser	GGA	[ENA]	○
>W1911766283	QXDK01000014	Alphaproteobacteria	Cereibacter sphaeroides SCJ [QXDK]	88732	88643	-	Ser	GGA	[ENA]	○
>W1911810983	QZCG01000016	Alphaproteobacteria	Paracoccus onubensis 1011MAR3C25 [QZCG]	49850	49761	-	Ser	GGA	[ENA]	○
>W1911813198	QZEV01000039	Alphaproteobacteria	Paracoccus aestuarii DSM 19484 [QZEV]	13365	13454	+	Ser	GGA	[ENA]	○
>W1911813229	QZEW01000002	Alphaproteobacteria	Paracoccus siganidrum DSM 26381 [QZEW]	62182	62093	-	Ser	GGA	[ENA]	○
>W1810116257	PHOB01000015	Alphaproteobacteria	Cereibacter sphaeroides YL101 [PHOB]	14665	14576	-	Ser	GGA	[ENA]	○
>W1810119966	PHSI01000099	Alphaproteobacteria	Cereibacter azotoformans YLK20 [PHSI]	1581	1492	-	Ser	GGA	[ENA]	○
>W1810385269	PXNQ01000008	Alphaproteobacteria	Paracoccus methylarcula VKM B-2159 [PXNQ]	141210	141299	+	Ser	GGA	[ENA]	○
>W1810426271	PYWA01000007	Alphaproteobacteria	Paracoccus indicus IO390502 [PYWA]	117944	117855	-	Ser	GGA	[ENA]	○
>W1810445048	PZKG01000115	Alphaproteobacteria	Cereibacter changlensis JA139 [PZKG]	7874	7963	+	Ser	GGA	[ENA]	○
>W1810463821	PZZW01000002	Alphaproteobacteria	Cereibacter johrii JA192 [PZZW]	584274	584185	-	Ser	GGA	[ENA]	○
>W1810543605	QDKM01000007	Alphaproteobacteria	Pararhodobacter oceanensis AM505 [QDKM]	3401	3312	-	Ser	GGA	[ENA]	○
>W1810667430	QJPK01000010	Alphaproteobacteria	Paracoccus sediminilitoris DSL-16 [QJPK]	133352	133441	+	Ser	GGA	[ENA]	○
>W1810684480	QKYL01000045	Alphaproteobacteria	Paracoccus saliphilus CCTCC AB 2016131 [QKYL]	46002	46091	+	Ser	GGA	[ENA]	○
>W1810686012	QKZS01000019	Alphaproteobacteria	Cereibacter changlensis DSM 18774 [QKZS]	5424	5335	-	Ser	GGA	[ENA]	○
>W1810699115	QMCC01000008	Alphaproteobacteria	Cereibacter johrii CDR-SL 7Cii [QMCC]	677278	677189	-	Ser	GGA	[ENA]	○
>W1810785195	QRBG01000025	Alphaproteobacteria	Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]	511257	511168	-	Ser	GGA	[ENA]	○
>W1511698358	LGHS01000020	Alphaproteobacteria	Pseudorhodobacter aquimaris KCTC 23043 [LGHS]	58947	59036	+	Ser	GGA	[ENA]	○
>W1511698414	LGHT01000032	Alphaproteobacteria	Pseudorhodobacter wandonensis KCTC 23672 [LGHT]	12482	12393	-	Ser	GGA	[ENA]	○
>W1511698465	LGHU01000086	Alphaproteobacteria	Pseudorhodobacter antarcticus KCTC 23700 [LGHU]	25602	25691	+	Ser	GGA	[ENA]	○
>W1511698488	LGHV01000020	Alphaproteobacteria	Pseudorhodobacter ferrugineus LMG 22047 [LGHV]	149701	149790	+	Ser	GGA	[ENA]	○
>W11160188	AFER01000001	Alphaproteobacteria	Cereibacter sphaeroides WS8N [AFER]	1347068	1346979	-	Ser	GGA	[ENA]	○
>C161048365	CP012960	Alphaproteobacteria	Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]	1942454	1942365	-	Ser	GGA	-	○
>W121076789	AKBU01000001	Alphaproteobacteria	Cereibacter sphaeroides 2.4.1 [AKBU]	2964397	2964308	-	Ser	GGA	[ENA]	○
>W121102136	AKVW01000001	Alphaproteobacteria	Cereibacter sphaeroides 2.4.1 [AKVW]	1942461	1942372	-	Ser	GGA	[ENA]	○
>W1710540935	FNXG01000001	Alphaproteobacteria	Paracoccus alkenifer [FNXG]	131688	131599	-	Ser	GGA	[ENA]	○
>W1710546972	FOCO01000040	Alphaproteobacteria	Pseudorhodobacter antarcticus [FOCO]	3077	2988	-	Ser	GGA	[ENA]	○
>W1710547694	FODE01000020	Alphaproteobacteria	Paracoccus alcaliphilus [FODE]	58437	58526	+	Ser	GGA	[ENA]	○
>W1710592381	FRCK01000005	Alphaproteobacteria	Paracoccus solventivorans [FRCK]	97199	97288	+	Ser	GGA	[ENA]	○
>W1710599541	FTOU01000008	Alphaproteobacteria	Paracoccus saliphilus [FTOU]	102032	101943	-	Ser	GGA	[ENA]	○
>W1710626830	JPKW01000005	Alphaproteobacteria	Paracoccus sp. SM22M-07 [JPKW]	81470	81381	-	Ser	GGA	[ENA]	○