tRNA genes clustered and arranged according to each identical group

Alphaproteobacteria

Anticodon = GGA

HIT: 3 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.24862 (1 seq.)
>PL171001245 CP016463 Alphaproteobacteria Bosea sp. RAC05 plasmid:pBSY19_1 471341 471430 + Ser GGA [ENA]
Identical group No.46198 (54 seq.)
>W1710853427 LLWQ01000217 Alphaproteobacteria Paracoccus sp. MKU1 (LLWQ) 1855 1766 - Ser GGA [ENA]
>W1710889757 LNBC01000030 Alphaproteobacteria Paracoccus aminovorans (LNBC) 123451 123540 + Ser GGA [ENA]
>W1712104736 NIPZ01000003 Alphaproteobacteria Paracoccus yeei (NIPZ) 3404 3493 + Ser GGA [ENA]
>C171107693 CP020442 Alphaproteobacteria Paracoccus yeei FDAARGOS_252 (CP020442) 675871 675782 - Ser GGA -
>C171110798 CP020612 Alphaproteobacteria Paracoccus contaminans RKI 16-01929T (CP020612) 72716 72627 - Ser GGA -
>W131158919 AQUO01000001 Alphaproteobacteria Paracoccus sp. N5 [AQUO] 637412 637323 - Ser GGA [ENA]
>C016012 CP000489 Alphaproteobacteria Paracoccus denitrificans PD1222 948593 948682 + Ser GGA [Ensembl]
>W141216624 AZVA01000005 Alphaproteobacteria Paracoccus sp. J55 [AZVA] 173424 173513 + Ser GGA [ENA]
>W141277320 JAEM01000043 Alphaproteobacteria Paracoccus pantotrophus J46 [JAEM] 9893 9804 - Ser GGA [ENA]
>W141277354 JAEN01000009 Alphaproteobacteria Paracoccus sp. J39 [JAEN] 39037 39126 + Ser GGA [ENA]
>W141279584 JAGK01000020 Alphaproteobacteria Paracoccus pantotrophus J40 [JAGK] 24162 24073 - Ser GGA [ENA]
>WENV183729327 PJTQ01022258 [PJTQ] soil metagenome; Soil (3) enriched on wood chips 760 849 + Ser GGA [ENA]
>WENV170564883 CZPY01000030 [CZPY] metagenome; PAHs-polluted Soil 123451 123540 + Ser GGA [ENA]
>PL191000041 CP000489 Alphaproteobacteria Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489) 948593 948682 + Ser GGA [Ensembl]
>C181099810 CP024422 Alphaproteobacteria Paracoccus yeei TT13 (CP024422) 181238 181149 - Ser GGA -
>C181119687 CP025583 Alphaproteobacteria Paracoccus sp. CBA4604 (CP025583) 1377143 1377054 - Ser GGA -
>C181190855 CP030239 Alphaproteobacteria Paracoccus mutanolyticus RSP-02 (CP030239) 669323 669234 - Ser GGA -
>C181203413 LN832559 Alphaproteobacteria Paracoccus aminovorans (LN832559) 2296258 2296169 - Ser GGA -
>C191073598 CP031078 Alphaproteobacteria Paracoccus yeei CCUG 32053 (CP031078) 2184486 2184397 - Ser GGA -
>W09103073 AAIT01000027 Alphaproteobacteria Paracoccus denitrificans PD1222 [AAIT] 22635 22546 - Ser GGA [ENA]
>C191134383 CP035090 Alphaproteobacteria Paracoccus denitrificans ATCC 19367 (CP035090, CP035091) 2542992 2543081 + Ser GGA -
>W141558887 JHWH01000038 Alphaproteobacteria Paracoccus yeei ATCC BAA-599 [JHWH] 15933 16022 + Ser GGA [ENA]
>W1911245319 NSJZ01000002 Alphaproteobacteria Paracoccus sp. WN007 (NSJZ) 324211 324300 + Ser GGA [ENA]
>W1810236002 PPGA01000025 Alphaproteobacteria Paracoccus denitrificans ISTOD1 (PPGA) 18036 18125 + Ser GGA [ENA]
>W1810585305 QFCQ01000008 Alphaproteobacteria Paracoccus thiocyanatus SST (QFCQ) 3442 3531 + Ser GGA [ENA]
>W1810697115 QLUV01000003 Alphaproteobacteria Paracoccus sp. SYSUP0003 (QLUV) 37662 37573 - Ser GGA [ENA]
>W1810750729 QOZU01000005 Alphaproteobacteria Paracoccus pantotrophus KS1 (QOZU) 34731 34642 - Ser GGA [ENA]
>W1810762340 QPML01000104 Alphaproteobacteria Paracoccus versutus MAL 1HM19 (QPML) 11472 11383 - Ser GGA [ENA]
>W1810862253 QTUJ01000002 Alphaproteobacteria Paracoccus bengalensis DSM 17099 (QTUJ) 908029 908118 + Ser GGA [ENA]
>W1810884843 QUMX01000005 Alphaproteobacteria Paracoccus versutus DSM 582 (QUMX) 28061 28150 + Ser GGA [ENA]
>C11117031 CP002897 Alphaproteobacteria Paracoccus denitrificans SD1 755260 755349 + Ser GGA [Ensembl]
>W1511348575 JRKN01000048 Alphaproteobacteria Paracoccus halophilus JCM 14014 [JRKN] 14676 14765 + Ser GGA [ENA]
>W1511348594 JRKO01000007 Alphaproteobacteria Paracoccus versutus DSM 582 [JRKO] 108658 108569 - Ser GGA [ENA]
>W1511348641 JRKP01000012 Alphaproteobacteria Paracoccus sanguinis 39524 [JRKP] 20358 20447 + Ser GGA [ENA]
>W1511348689 JRKQ01000024 Alphaproteobacteria Paracoccus sp. 5503 [JRKQ] 8323 8412 + Ser GGA [ENA]
>W1511348757 JRKR01000131 Alphaproteobacteria Paracoccus sanguinis 10990 [JRKR] 7686 7775 + Ser GGA [ENA]
>W1511348766 JRKS01000001 Alphaproteobacteria Paracoccus sphaerophysae HAMBI 3106 [JRKS] 166160 166249 + Ser GGA [ENA]
>W1511348838 JRKT01000052 Alphaproteobacteria Paracoccus sp. 4681 [JRKT] 14295 14206 - Ser GGA [ENA]
>W11143062 AEPN01000058 Alphaproteobacteria Paracoccus sp. TRP [AEPN] 3681 3592 - Ser GGA [ENA]
>W1610049828 BBFH01000159 Alphaproteobacteria Paracoccus denitrificans JCM 21484 (BBFH) 2948 3037 + Ser GGA [ENA]
>W1610716551 LLWQ01000217 Alphaproteobacteria Paracoccus sp. MKU1 (LLWQ) 1855 1766 - Ser GGA [ENA]
>W1610750135 LNBC01000030 Alphaproteobacteria Paracoccus aminovorans (LNBC) 123451 123540 + Ser GGA [ENA]
>W1710046227 BBFH01000159 Alphaproteobacteria Paracoccus denitrificans JCM 21484 (BBFH) 2948 3037 + Ser GGA [ENA]
>W1710513620 FNAH01000005 Alphaproteobacteria Paracoccus isoporae (FNAH) 216237 216326 + Ser GGA [ENA]
>W1710518480 FNEA01000044 Alphaproteobacteria Paracoccus denitrificans (FNEA) 21731 21820 + Ser GGA [ENA]
>W1710521172 FNGE01000005 Alphaproteobacteria Paracoccus chinensis (FNGE) 2348 2259 - Ser GGA [ENA]
>W1710528221 FNNA01000003 Alphaproteobacteria Paracoccus sanguinis (FNNA) 20326 20415 + Ser GGA [ENA]
>W1710555571 FOJO01000045 Alphaproteobacteria Paracoccus halophilus (FOJO) 1518 1429 - Ser GGA [ENA]
>W1710563592 FOPU01000023 Alphaproteobacteria Paracoccus aminovorans (FOPU) 55259 55348 + Ser GGA [ENA]
>W1710571587 FOWA01000066 Alphaproteobacteria Paracoccus pantotrophus (FOWA) 690 601 - Ser GGA [ENA]
>W1710574701 FOYK01000044 Alphaproteobacteria Paracoccus denitrificans (FOYK) 5822 5733 - Ser GGA [ENA]
>W1710581766 FPKI01000010 Alphaproteobacteria Paracoccus pantotrophus (FPKI) 14316 14227 - Ser GGA [ENA]
>W1710596189 FTMK01000007 Alphaproteobacteria Paracoccus thiocyanatus (FTMK) 108937 108848 - Ser GGA [ENA]
>W1710608136 FXAQ01000044 Alphaproteobacteria Paracoccus sp. J56 (FXAQ) 13686 13775 + Ser GGA [ENA]
Identical group No.49404 (69 seq.)
>W1711294767 MABH01000137 Alphaproteobacteria Rhodobacter johrii (MABH) 22706 22795 + Ser GGA [ENA]
>W1711385819 MEES01000002 Alphaproteobacteria Paracoccus sp. SCN 68-21 (MEES) 708 619 - Ser GGA [ENA]
>W131058661 ANFS01000044 Alphaproteobacteria Rhodobacter sp. AKP1 [ANFS] 88210 88121 - Ser GGA [ENA]
>W131155852 AQOX01000003 Alphaproteobacteria Loktanella hongkongensis DSM 17492 [AQOX] 364150 364239 + Ser GGA [ENA]
>W131216070 ATVN01000009 Alphaproteobacteria Pseudorhodobacter ferrugineus DSM 5888 [ATVN] 149301 149390 + Ser GGA [ENA]
>C171037005 CP015210 Alphaproteobacteria Rhodobacter sphaeroides MBTLJ-13 1942458 1942369 - Ser GGA -
>C019230 CP000143 Alphaproteobacteria Rhodobacter sphaeroides 2.4.1 1942528 1942439 - Ser GGA [Ensembl]
>C019277 CP000661 Alphaproteobacteria Rhodobacter sphaeroides ATCC 17025 1850753 1850842 + Ser GGA [Ensembl]
>C019320 CP000577 Alphaproteobacteria Rhodobacter sphaeroides ATCC 17029 1974842 1974753 - Ser GGA [Ensembl]
>WENV180231738 OBCO01000001 [OBCO] synthetic metagenome; purchased from BEI Resources HM-276D 263595 263506 - Ser GGA [ENA]
>WENV180232712 OBCP01000001 [OBCP] synthetic metagenome; purchased from BEI Resources HM-276D 505711 505622 - Ser GGA [ENA]
>w001254 AAAE01000130 Alphaproteobacteria Rhodobacter sphaeroides [AAAE] 5627 5536 - Ser GGA [ENA]
>WENV180569513 OCLR01000122 [OCLR] synthetic metagenome; purchased from BEI Resources HM-276D 98341 98252 - Ser GGA [ENA]
>WENV180570444 OCLS01000119 [OCLS] synthetic metagenome; purchased from BEI Resources HM-276D 123087 122998 - Ser GGA [ENA]
>WENV180571095 OCLT01000002 [OCLT] synthetic metagenome; purchased from BEI Resources HM-276D 263484 263395 - Ser GGA [ENA]
>WENV180573357 OCLW01000006 [OCLW] synthetic metagenome; purchased from BEI Resources HM-276D 233735 233824 + Ser GGA [ENA]
>WENV180639421 OCRL01000002 [OCRL] synthetic metagenome; purchased from BEI Resources HM-276D 263484 263395 - Ser GGA [ENA]
>WENV180640324 OCRM01000001 [OCRM] synthetic metagenome; purchased from BEI Resources HM-276D 505711 505622 - Ser GGA [ENA]
>W141063313 APGJ01000004 Alphaproteobacteria Loktanella hongkongensis DSM 17492 [APGJ] 365031 365120 + Ser GGA [ENA]
>W141230432 BATB01000015 Alphaproteobacteria Loktanella cinnabarina LL-001 [BATB] 18255 18344 + Ser GGA [ENA]
>WENV170014614 AYSL01000884 [AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal 273 362 + Ser GGA [ENA]
>PL191001397 CP039965 Alphaproteobacteria Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965) 1249356 1249445 + Ser GGA [ENA]
>C181017236 CP015287 Alphaproteobacteria Rhodobacter sphaeroides MBTLJ-20 (CP015287, CP015288) 1942445 1942356 - Ser GGA -
>C181191121 CP030271 Alphaproteobacteria Rhodobacter sphaeroides 2.4.1 (CP030271, CP030272) 1942465 1942376 - Ser GGA -
>C181194171 CP030918 Alphaproteobacteria Paracoccus sp. SC2-6 (CP030918) 2281676 2281765 + Ser GGA -
>C191079654 CP031750 Alphaproteobacteria Rhodobacter sphaeroides EBL0706 (CP031750, CP031751) 1607747 1607836 + Ser GGA -
>W09104750 AAME01000075 Alphaproteobacteria Rhodobacter sphaeroides ATCC 17025 [AAME] 1407 1318 - Ser GGA [ENA]
>W09104770 AAMF01000002 Alphaproteobacteria Rhodobacter sphaeroides ATCC 17029 [AAMF] 706961 707050 + Ser GGA [ENA]
>C191151000 CP036419 Alphaproteobacteria Rhodobacter sphaeroides HJ (CP036419, CP036420) 1026717 1026806 + Ser GGA -
>C191159590 CP038439 Alphaproteobacteria Paracoccus sp. 2251 (CP038439) 2316443 2316354 - Ser GGA -
>W1910548876 FZOV01000005 Alphaproteobacteria Rhodobacter megalophilus DSM 18937 (FZOV) 233813 233902 + Ser GGA [ENA]
>W1910549888 FZQB01000015 Alphaproteobacteria Paracoccus seriniphilus DSM 14827 (FZQB) 315 226 - Ser GGA [ENA]
>C09109068 CP001150 Alphaproteobacteria Rhodobacter sphaeroides KD131 1574401 1574312 - Ser GGA [Ensembl]
>W1911189707 NQWH01000010 Alphaproteobacteria Loktanella cinnabarina XM1 (NQWH) 122832 122743 - Ser GGA [ENA]
>W1911491944 OAOQ01000026 Alphaproteobacteria Rhodobacter ovatus JA234 (OAOQ) 731 820 + Ser GGA [ENA]
>W1911698522 QNRC01000057 Alphaproteobacteria Paracoccus siganidrum M26 (QNRC) 472 383 - Ser GGA [ENA]
>W1911705518 QOKZ01000005 Alphaproteobacteria Paracoccus sp. 4-2 (QOKZ) 312886 312797 - Ser GGA [ENA]
>W1911718105 QQVY01000005 Alphaproteobacteria Paracoccus sp. JM45 (QQVY) 182024 182113 + Ser GGA [ENA]
>W1911749446 QWGP01000007 Alphaproteobacteria Rhodobacter sphaeroides FY (QWGP) 2570 2481 - Ser GGA [ENA]
>W1911766283 QXDK01000014 Alphaproteobacteria Rhodobacter sphaeroides SCJ (QXDK) 88732 88643 - Ser GGA [ENA]
>W1911810983 QZCG01000016 Alphaproteobacteria Paracoccus sp. 1011MAR3C25 (QZCG) 49850 49761 - Ser GGA [ENA]
>W1911813198 QZEV01000039 Alphaproteobacteria Paracoccus aestuarii DSM 19484 (QZEV) 13365 13454 + Ser GGA [ENA]
>W1911813229 QZEW01000002 Alphaproteobacteria Paracoccus siganidrum DSM 26381 (QZEW) 62182 62093 - Ser GGA [ENA]
>W1810116257 PHOB01000015 Alphaproteobacteria Rhodobacter sphaeroides YL101 (PHOB) 14665 14576 - Ser GGA [ENA]
>W1810119966 PHSI01000099 Alphaproteobacteria Rhodobacter azotoformans YLK20 (PHSI) 1581 1492 - Ser GGA [ENA]
>W1810385269 PXNQ01000008 Alphaproteobacteria Methylarcula marina VKM B-2159 (PXNQ) 141210 141299 + Ser GGA [ENA]
>W1810426271 PYWA01000007 Alphaproteobacteria Paracoccus sp. IO390502 (PYWA) 117944 117855 - Ser GGA [ENA]
>W1810445048 PZKG01000115 Alphaproteobacteria Cereibacter changlensis JA139 (PZKG) 7874 7963 + Ser GGA [ENA]
>W1810463821 PZZW01000002 Alphaproteobacteria Rhodobacter johrii JA192 (PZZW) 584274 584185 - Ser GGA [ENA]
>W1810543605 QDKM01000007 Alphaproteobacteria Pararhodobacter sp. AM505 (QDKM) 3401 3312 - Ser GGA [ENA]
>W1810667430 QJPK01000010 Alphaproteobacteria Paracoccus sp. DSL-16 (QJPK) 133352 133441 + Ser GGA [ENA]
>W1810684480 QKYL01000045 Alphaproteobacteria Paracoccus saliphilus CCTCC AB 2016131 (QKYL) 46002 46091 + Ser GGA [ENA]
>W1810686012 QKZS01000019 Alphaproteobacteria Cereibacter changlensis DSM 18774 (QKZS) 5424 5335 - Ser GGA [ENA]
>W1810699115 QMCC01000008 Alphaproteobacteria Rhodobacter johrii CDR-SL 7Cii (QMCC) 677278 677189 - Ser GGA [ENA]
>W1810785195 QRBG01000025 Alphaproteobacteria Rhodobacter sphaeroides f. sp. denitrificans IL106 (QRBG) 511257 511168 - Ser GGA [ENA]
>W1511698358 LGHS01000020 Alphaproteobacteria Pseudorhodobacter aquimaris KCTC 23043 [LGHS] 58947 59036 + Ser GGA [ENA]
>W1511698414 LGHT01000032 Alphaproteobacteria Pseudorhodobacter wandonensis KCTC 23672 [LGHT] 12482 12393 - Ser GGA [ENA]
>W1511698465 LGHU01000086 Alphaproteobacteria Pseudorhodobacter antarcticus KCTC 23700 [LGHU] 25602 25691 + Ser GGA [ENA]
>W1511698488 LGHV01000020 Alphaproteobacteria Pseudorhodobacter ferrugineus LMG 22047 [LGHV] 149701 149790 + Ser GGA [ENA]
>W11160188 AFER01000001 Alphaproteobacteria Rhodobacter sphaeroides WS8N [AFER] 1347068 1346979 - Ser GGA [ENA]
>C161048365 CP012960 Alphaproteobacteria Rhodobacter sphaeroides MBTLJ-8 1942454 1942365 - Ser GGA -
>W121076789 AKBU01000001 Alphaproteobacteria Rhodobacter sphaeroides 2.4.1 [AKBU] 2964397 2964308 - Ser GGA [ENA]
>W121102136 AKVW01000001 Alphaproteobacteria Rhodobacter sphaeroides 2.4.1 [AKVW] 1942461 1942372 - Ser GGA [ENA]
>W1710540935 FNXG01000001 Alphaproteobacteria Paracoccus alkenifer (FNXG) 131688 131599 - Ser GGA [ENA]
>W1710546972 FOCO01000040 Alphaproteobacteria Pseudorhodobacter antarcticus (FOCO) 3077 2988 - Ser GGA [ENA]
>W1710547694 FODE01000020 Alphaproteobacteria Paracoccus alcaliphilus (FODE) 58437 58526 + Ser GGA [ENA]
>W1710592381 FRCK01000005 Alphaproteobacteria Paracoccus solventivorans (FRCK) 97199 97288 + Ser GGA [ENA]
>W1710599541 FTOU01000008 Alphaproteobacteria Paracoccus saliphilus (FTOU) 102032 101943 - Ser GGA [ENA]
>W1710626830 JPKW01000005 Alphaproteobacteria Paracoccus sp. SM22M-07 (JPKW) 81470 81381 - Ser GGA [ENA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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