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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275226 (81 seq.)
>PL171001507
CP021802
Alphaproteobacteria
Sinorhizobium meliloti USDA1021 plasmid:psymB
663991
664067
+
His
GTG
[ENA]
¡û
>C171117307
CP021219
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CP021219]
364441
364365
-
His
GTG
-
¡û
>C171123323
CP021793
Alphaproteobacteria
Sinorhizobium meliloti USDA1157 [CP021793]
381042
381118
+
His
GTG
-
¡û
>C171123413
CP021797
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 [CP021797]
862467
862391
-
His
GTG
-
¡û
>C171123505
CP021804
Alphaproteobacteria
Sinorhizobium meliloti T073 [CP021804]
1361077
1361001
-
His
GTG
-
¡û
>C171123555
CP021808
Alphaproteobacteria
Sinorhizobium meliloti Rm41 [CP021808]
3193115
3193191
+
His
GTG
-
¡û
>C171123606
CP021812
Alphaproteobacteria
Sinorhizobium meliloti M270 [CP021812]
2360380
2360304
-
His
GTG
-
¡û
>C171123636
CP021818
Alphaproteobacteria
Sinorhizobium meliloti M162 [CP021818]
825346
825422
+
His
GTG
-
¡û
>C171123691
CP021822
Alphaproteobacteria
Sinorhizobium meliloti KH46 [CP021822]
1417955
1418031
+
His
GTG
-
¡û
>C171123761
CP021825
Alphaproteobacteria
Sinorhizobium meliloti KH35c [CP021825]
2821391
2821315
-
His
GTG
-
¡û
>C171123794
CP021829
Alphaproteobacteria
Sinorhizobium meliloti HM006 [CP021829]
1228961
1229037
+
His
GTG
-
¡û
>W131159043
AQUS01000275
Alphaproteobacteria
Sinorhizobium medicae WSM1369 [AQUS]
36145
36069
-
His
GTG
[ENA]
¡û
>W131162666
AQZC01000014
Alphaproteobacteria
Sinorhizobium medicae WSM1115 [AQZC]
1027795
1027719
-
His
GTG
[ENA]
¡û
>W131213933
ATTK01000014
Alphaproteobacteria
Sinorhizobium meliloti MVII-I [ATTK]
55586
55662
+
His
GTG
[ENA]
¡û
>W131213981
ATTL01000005
Alphaproteobacteria
Sinorhizobium medicae DI28 [ATTL]
220710
220786
+
His
GTG
[ENA]
¡û
>W131214261
ATTR01000007
Alphaproteobacteria
Sinorhizobium medicae WSM244 [ATTR]
202734
202810
+
His
GTG
[ENA]
¡û
>W131218883
ATYC01000022
Alphaproteobacteria
Sinorhizobium medicae WSM4191 [ATYC]
379116
379192
+
His
GTG
[ENA]
¡û
>W131219113
ATYH01000002
Alphaproteobacteria
Sinorhizobium meliloti CIAM1775 [ATYH]
71340
71264
-
His
GTG
[ENA]
¡û
>W131219476
ATYP01000060
Alphaproteobacteria
Sinorhizobium meliloti RRl128 [ATYP]
2491
2415
-
His
GTG
[ENA]
¡û
>W131220082
ATZC01000001
Alphaproteobacteria
Sinorhizobium meliloti GVPV12 [ATZC]
153718
153794
+
His
GTG
[ENA]
¡û
>W131220141
ATZD01000009
Alphaproteobacteria
Sinorhizobium meliloti Mlalz-1 [ATZD]
135863
135939
+
His
GTG
[ENA]
¡û
>C022743
CP000738
Alphaproteobacteria
Sinorhizobium medicae WSM419 [CP000738]
348637
348713
+
His
GTG
[Ensembl]
¡û
>C022800
AL591688
Alphaproteobacteria
Sinorhizobium meliloti 1021 [AL591688]
797938
798014
+
His
GTG
[Ensembl]
¡û
>W141151961
AXBL01000002
Alphaproteobacteria
Sinorhizobium meliloti BO21CC [AXBL]
41909
41985
+
His
GTG
[ENA]
¡û
>W141152024
AXBM01000097
Alphaproteobacteria
Sinorhizobium meliloti AK58 [AXBM]
28715
28791
+
His
GTG
[ENA]
¡û
>W141207540
AZNW01000018
Alphaproteobacteria
Sinorhizobium meliloti WSM1022 [AZNW]
47955
48031
+
His
GTG
[ENA]
¡û
>W141255017
CBTS010000223
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CBTS]
1541
1617
+
His
GTG
[ENA]
¡û
>C181037804
CP019485
Alphaproteobacteria
Sinorhizobium meliloti B401 [CP019485]
757428
757504
+
His
GTG
-
¡û
>C181037855
CP019488
Alphaproteobacteria
Sinorhizobium meliloti B399 [CP019488]
795588
795664
+
His
GTG
-
¡û
>C181038012
CP019584
Alphaproteobacteria
Sinorhizobium meliloti [CP019584]
761381
761457
+
His
GTG
-
¡û
>W09106112
AATG01000001
Alphaproteobacteria
Sinorhizobium medicae WSM419 [AATG]
661876
661952
+
His
GTG
[ENA]
¡û
>W1910005726
AYSQ01000017
Alphaproteobacteria
Sinorhizobium meliloti CCBAU 01290 [AYSQ]
51239
51163
-
His
GTG
[ENA]
¡û
>W1910183022
BJNJ01000031
Alphaproteobacteria
Sinorhizobium meliloti NBRC 14782 [BJNJ]
70866
70790
-
His
GTG
[ENA]
¡û
>W1910856391
NBUA01000081
Alphaproteobacteria
Sinorhizobium medicae Str18 [NBUA]
52492
52416
-
His
GTG
[ENA]
¡û
>W1910856436
NBUB01000225
Alphaproteobacteria
Sinorhizobium medicae Str17 [NBUB]
54354
54430
+
His
GTG
[ENA]
¡û
>W1910856484
NBUC01000181
Alphaproteobacteria
Sinorhizobium medicae Str16 [NBUC]
27325
27249
-
His
GTG
[ENA]
¡û
>W1910856538
NBUD01000136
Alphaproteobacteria
Sinorhizobium medicae Str15 [NBUD]
59829
59753
-
His
GTG
[ENA]
¡û
>W1910856575
NBUE01000189
Alphaproteobacteria
Sinorhizobium medicae Str14 [NBUE]
34739
34663
-
His
GTG
[ENA]
¡û
>W1910856597
NBUF01000063
Alphaproteobacteria
Sinorhizobium medicae Str13 [NBUF]
49849
49773
-
His
GTG
[ENA]
¡û
>W1910856679
NBUG01000154
Alphaproteobacteria
Sinorhizobium medicae Str12 [NBUG]
52663
52587
-
His
GTG
[ENA]
¡û
>W1910856701
NBUH01000133
Alphaproteobacteria
Sinorhizobium medicae Str11 [NBUH]
34687
34611
-
His
GTG
[ENA]
¡û
>W1910856775
NBUI01000144
Alphaproteobacteria
Sinorhizobium medicae Str10 [NBUI]
52439
52363
-
His
GTG
[ENA]
¡û
>W1910856779
NBUJ01000039
Alphaproteobacteria
Sinorhizobium medicae Str9 [NBUJ]
125384
125460
+
His
GTG
[ENA]
¡û
>W1910856828
NBUK01000029
Alphaproteobacteria
Sinorhizobium medicae Str8 [NBUK]
364773
364849
+
His
GTG
[ENA]
¡û
>W1910856872
NBUL01000136
Alphaproteobacteria
Sinorhizobium medicae Str7 [NBUL]
59825
59749
-
His
GTG
[ENA]
¡û
>W1910856917
NBUM01000042
Alphaproteobacteria
Sinorhizobium medicae Str6 [NBUM]
293568
293644
+
His
GTG
[ENA]
¡û
>W1910856981
NBUN01000705
Alphaproteobacteria
Sinorhizobium medicae Str5 [NBUN]
5207
5131
-
His
GTG
[ENA]
¡û
>W1910857016
NBUO01000197
Alphaproteobacteria
Sinorhizobium medicae Str4 [NBUO]
255233
255309
+
His
GTG
[ENA]
¡û
>W1910857051
NBUP01000033
Alphaproteobacteria
Sinorhizobium medicae Str3 [NBUP]
59794
59718
-
His
GTG
[ENA]
¡û
>W1910857115
NBUQ01000135
Alphaproteobacteria
Sinorhizobium medicae Str1 [NBUQ]
177674
177750
+
His
GTG
[ENA]
¡û
>W1911412952
NWVT01000025
Alphaproteobacteria
Ensifer sp. T2_8 [NWVT]
51270
51194
-
His
GTG
[ENA]
¡û
>W1810357249
PVNM01000288
Alphaproteobacteria
Sinorhizobium meliloti BM806 [PVNM]
71207
71131
-
His
GTG
[ENA]
¡û
>W1810403689
PYJO01000013
Alphaproteobacteria
Mesorhizobium loti LMG 6125 [PYJO]
404718
404794
+
His
GTG
[ENA]
¡û
>W1810448683
PZMI01000005
Alphaproteobacteria
Sinorhizobium meliloti AK555 [PZMI]
135436
135512
+
His
GTG
[ENA]
¡û
>W1810448734
PZMJ01000011
Alphaproteobacteria
Sinorhizobium meliloti CXM1-105 [PZMJ]
32286
32362
+
His
GTG
[ENA]
¡û
>C151044677
CP009144
Alphaproteobacteria
Sinorhizobium meliloti RMO17 [CP009144]
787098
787174
+
His
GTG
[Ensembl]
¡û
>W10126543
AEDG01000026
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
31999
32075
+
His
GTG
[ENA]
¡û
>W10126591
AEDH01000014
Alphaproteobacteria
Sinorhizobium meliloti AK83 [AEDH]
96118
96194
+
His
GTG
[ENA]
¡û
>C11120765
CP002781
Alphaproteobacteria
Sinorhizobium meliloti AK83 [CP002781, CP002782, CP002783]
444593
444669
+
His
GTG
[Ensembl]
¡û
>C11120820
CP002740
Alphaproteobacteria
Sinorhizobium meliloti BL225C [CP002740]
360796
360872
+
His
GTG
[Ensembl]
¡û
>C11120872
CP001830
Alphaproteobacteria
Sinorhizobium meliloti SM11 [CP001830]
397270
397346
+
His
GTG
[Ensembl]
¡û
>W11133804
AEDG01000026
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
31999
32075
+
His
GTG
[ENA]
¡û
>W11133852
AEDH01000014
Alphaproteobacteria
Sinorhizobium meliloti AK83 [AEDH]
96118
96194
+
His
GTG
[ENA]
¡û
>W1511555759
JZXD01000011
Alphaproteobacteria
Sinorhizobium meliloti L5-30 [JZXD]
36627
36703
+
His
GTG
[ENA]
¡û
>W121021501
AGVV01000010
Alphaproteobacteria
Sinorhizobium meliloti CCNWSX0020 [AGVV]
43162
43238
+
His
GTG
[ENA]
¡û
>W121103569
AKZR01000093
Alphaproteobacteria
Sinorhizobium meliloti H1 [AKZR]
1533
1609
+
His
GTG
[ENA]
¡û
>W121103624
AKZS01000181
Alphaproteobacteria
Sinorhizobium meliloti C0438LL [AKZS]
21989
21913
-
His
GTG
[ENA]
¡û
>W121103670
AKZT01000202
Alphaproteobacteria
Sinorhizobium meliloti C0431A [AKZT]
1429
1505
+
His
GTG
[ENA]
¡û
>W121103735
AKZU01000453
Alphaproteobacteria
Sinorhizobium meliloti AK75 [AKZU]
1321
1397
+
His
GTG
[ENA]
¡û
>W121103780
AKZV01000318
Alphaproteobacteria
Sinorhizobium meliloti AK11 [AKZV]
1533
1609
+
His
GTG
[ENA]
¡û
>W121103821
AKZW01000072
Alphaproteobacteria
Sinorhizobium meliloti AE608H [AKZW]
32957
32881
-
His
GTG
[ENA]
¡û
>W121103899
AKZX01000556
Alphaproteobacteria
Sinorhizobium meliloti A0643DD [AKZX]
1520
1596
+
His
GTG
[ENA]
¡û
>W121103924
AKZY01000124
Alphaproteobacteria
Sinorhizobium meliloti A0641M [AKZY]
32798
32722
-
His
GTG
[ENA]
¡û
>W121104027
AKZZ01000115
Alphaproteobacteria
Sinorhizobium meliloti 5A14 [AKZZ]
55217
55293
+
His
GTG
[ENA]
¡û
>W121104056
ALAA01000047
Alphaproteobacteria
Sinorhizobium meliloti 1A42 [ALAA]
48236
48160
-
His
GTG
[ENA]
¡û
>W121104057
ALAA01000053
Alphaproteobacteria
Sinorhizobium meliloti 1A42 [ALAA]
1526
1602
+
His
GTG
[ENA]
¡û
>C131010035
CP003933
Alphaproteobacteria
Sinorhizobium meliloti GR4 [CP003933]
764388
764464
+
His
GTG
[Ensembl]
¡û
>C131013052
CP004140
Alphaproteobacteria
Sinorhizobium meliloti 2011 [CP004140]
797940
798016
+
His
GTG
[Ensembl]
¡û
>C131020418
HE995405
Alphaproteobacteria
Sinorhizobium meliloti Rm41 [HE995405]
375229
375305
+
His
GTG
[Ensembl]
¡û
>W1710530203
FNOO01000023
Alphaproteobacteria
Sinorhizobium meliloti [FNOO]
31857
31933
+
His
GTG
[ENA]
¡û
>W1710541805
FNYP01000014
Alphaproteobacteria
Sinorhizobium meliloti [FNYP]
60000
59924
-
His
GTG
[ENA]
¡û
Identical group No.806335 (1 seq.)
>PL171001248
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
471754
471827
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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