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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = TCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.524878 (6 seq.)
>PL171000283
CP000662
Alphaproteobacteria
Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01
865180
865105
-
Gly
TCC
[Ensembl]
¡û
>CL171400002
CP000662
Alphaproteobacteria
Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01
865180
865105
-
Gly
TCC
[Ensembl]
¡û
>C191079681
CP031751
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
888485
888410
-
Gly
TCC
-
¡û
>W09104752
AAME01000078
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
2777
2852
+
Gly
TCC
[ENA]
¡û
>W1810119949
PHSI01000038
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
71432
71507
+
Gly
TCC
[ENA]
¡û
>W1810477374
QAOT01000010
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
117396
117321
-
Gly
TCC
[ENA]
¡û
Identical group No.585775 (1 seq.)
>PL171001698
CP023549
Alphaproteobacteria
Rhodobacter sp. CZR27 plasmid:unnamed1
255960
256035
+
Gly
TCC
[ENA]
¡û
Identical group No.770386 (1 seq.)
>PL191000895
CP031358
Alphaproteobacteria
Erythrobacter sp. YH-07 plasmid:unnamed (CP031358)
218415
218341
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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