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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = GTA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57139 (1 seq.)
>CHL090101378
AY217738
Alveolata
Eimeria tenella
6323
6409
+
Tyr
GTA
[ENA]
¡û
Identical group No.176563 (1 seq.)
>CHL090103192
U87145
Alveolata
Toxoplasma gondii
6492
6576
+
Tyr
GTA
[ENA]
¡û
Identical group No.185406 (1 seq.)
>CHL1810003207
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
56117
56034
-
Tyr
GTA
[ENA]
¡û
Identical group No.189808 (3 seq.)
>WENV183622752
OOFW01005380
[OOFW] marine metagenome; sea ice
157
74
-
Tyr
GTA
[ENA]
¢þ
>CHL1810002677
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
19377
19296
-
Tyr
GTA
[ENA]
¡û
>CHL1810008345
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
3295
3214
-
Tyr
GTA
[ENA]
¡û
Identical group No.211464 (1 seq.)
>CHL1810002651
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
16683
16602
-
Tyr
GTA
[ENA]
¡û
Identical group No.227771 (1 seq.)
>CHL1810046785
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
42729
42647
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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