tRNA genes clustered and arranged according to each identical group

Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)

Anticodon = GGT

HIT: 1 Group(s).
Download Sequence Representative sequence of each cluster
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.655876 (58 seq.)
>W131231292 AUIJ01000002 Alphaproteobacteria Sediminimonas qiaohouensis DSM 21189 [AUIJ] 214979 215053 + Thr GGT [ENA] ¡û
>W1711621285 MPCY01000120 Alphaproteobacteria Roseobacter sp. MedPE-SW [MPCY] 437 363 - Thr GGT [ENA] ¡û
>W1711621337 MPDA01000007 Alphaproteobacteria Roseobacter sp. MedPE-SWde [MPDA] 125274 125348 + Thr GGT [ENA] ¡û
>W1711695343 MSIT01000046 Alphaproteobacteria Salibaculum halophilum WDS1C4 [MSIT] 386 312 - Thr GGT [ENA] ¡û
>W1711798589 MWVJ01000022 Alphaproteobacteria Pseudophaeobacter leonis [MWVJ] 9048 9122 + Thr GGT [ENA] ¡û
>C171047863 CP016364 Alphaproteobacteria Phaeobacter porticola P97 [CP016364] 3210892 3210966 + Thr GGT - ¡û
>C171088714 CP019044 Alphaproteobacteria Salaquimonas pukyongi RR3-28 [CP019044] 472286 472360 + Thr GGT - ¡û
>w023740 AAYC01000015 Alphaproteobacteria Roseobacter sp. SK209-2-6 [AAYC] 50499 50573 + Thr GGT [ENA] ¡û
>w013109 AANB01000002 Alphaproteobacteria Roseobacter sp. MED193 [AANB] 369892 369821 - Thr GGT [ENA] ¡û
>WENV180359263 OBNR01029445 [OBNR] marine metagenome; Seawater_00002010_00002149 388 462 + Thr GGT [ENA] ¢þ
>W141151664 AXBF01000003 Alphaproteobacteria Pseudophaeobacter arcticus DSM 23566 [AXBF] 489586 489660 + Thr GGT [ENA] ¡û
>WENV182541848 OJAU01007984 [OJAU] seawater metagenome; Sea water 335 261 - Thr GGT [ENA] ¢þ
>WENV182549664 OJBY01006297 [OJBY] seawater metagenome; Sea water 586 660 + Thr GGT [ENA] ¢þ
>WENV182575678 OJFV01009874 [OJFV] seawater metagenome; Sea water 305 231 - Thr GGT [ENA] ¢þ
>WENV182585835 OJHI01021365 [OJHI] seawater metagenome; Sea water 387 313 - Thr GGT [ENA] ¢þ
>WENV182592010 OJIO01043277 [OJIO] seawater metagenome; Sea water 418 344 - Thr GGT [ENA] ¢þ
>W141290105 JASC01000002 Alphaproteobacteria Sulfitobacter noctilucae NB-68 [JASC] 8098 8024 - Thr GGT [ENA] ¡û
>W141290175 JASD01000008 Alphaproteobacteria Sulfitobacter noctilucicola NB-77 [JASD] 1524209 1524135 - Thr GGT [ENA] ¡û
>W141290344 JASH01000016 Alphaproteobacteria Sulfitobacter mediterraneus KCTC 32188 [JASH] 111029 110955 - Thr GGT [ENA] ¡û
>WENV170022503 BCQK01016260 [BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama 712 638 - Thr GGT [ENA] ¢þ
>ENV08002609 ABPY01010442 microbial mat metagenome; Guerrero Negro Hypersaline Mat 10; altitude 310m AMSL; sample depth 1m below water level, 34-49mm depth into the mat 456 530 + Thr GGT [ENA] ¡û
>W141426682 JEMU01000003 Alphaproteobacteria Sulfitobacter mediterraneus [JEMU] 120822 120748 - Thr GGT [ENA] ¡û
>WENV170602710 FUWD010256279 [FUWD] metagenome; unknown 309 235 - Thr GGT [ENA] ¢þ
>WENV170962828 MRWF01028074 [MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell 561 635 + Thr GGT [ENA] ¢þ
>WENV170963616 MRWG01000370 [MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell 59996 60070 + Thr GGT [ENA] ¢þ
>C181064512 CP022415 Alphaproteobacteria Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415] 245445 245371 - Thr GGT - ¡û
>C191020038 CP022303 Alphaproteobacteria Thalassococcus sp. S3 [CP022303] 3758077 3758003 - Thr GGT - ¡û
>W141813588 JQEZ01000001 Alphaproteobacteria Ruegeria halocynthiae [JQEZ] 1269208 1269134 - Thr GGT [ENA] ¡û
>W1910285278 FREY01000010 Alphaproteobacteria Rhodobacteraceae bacterium Alg231-04 [FREY] 127215 127289 + Thr GGT [ENA] ¡û
>W1910469003 FWXB01000016 Alphaproteobacteria Roseovarius aestuarii CECT 7745 [FWXB] 10319 10393 + Thr GGT [ENA] ¡û
>W1910499730 FXYE01000001 Alphaproteobacteria Actibacterium lipolyticum CECT 8621 [FXYE] 750127 750053 - Thr GGT [ENA] ¡û
>W1910499888 FXYH01000027 Alphaproteobacteria Pelagimonas varians CECT 8663 [FXYH] 16089 16163 + Thr GGT [ENA] ¡û
>W1911538719 OMOR01000001 Alphaproteobacteria Ascidiaceihabitans donghaensis CECT 8599 [OMOR] 529797 529723 - Thr GGT [ENA] ¡û
>W1911539245 OMPQ01000014 Alphaproteobacteria Pseudophaeobacter sp. EL27 [OMPQ] 9792 9718 - Thr GGT [ENA] ¡û
>W1911539260 OMPR01000006 Alphaproteobacteria Rhodobacteraceae bacterium EL53 [OMPR] 105685 105759 + Thr GGT [ENA] ¡û
>W1911539387 OMPT01000010 Alphaproteobacteria Sulfitobacter mediterraneus EL44 [OMPT] 114674 114600 - Thr GGT [ENA] ¡û
>W1911582611 PHNT01000001 Alphaproteobacteria Roseovarius salinarum N53 [PHNT] 403892 403818 - Thr GGT [ENA] ¡û
>W1911638531 PVWS01000013 Alphaproteobacteria Roseovarius sp. A46 [PVWS] 5349 5423 + Thr GGT [ENA] ¡û
>W1810061275 PDNI01000065 Alphaproteobacteria Roseovarius nitratireducens TFZ [PDNI] 273150 273224 + Thr GGT [ENA] ¡û
>W1810365533 PVUF01000008 Alphaproteobacteria Tritonibacter scottomollicae DSM 25328 [PVUF] 46877 46951 + Thr GGT [ENA] ¡û
>W1810494778 QBFE01000027 Alphaproteobacteria Sulfitobacter sp. DFL-23 [QBFE] 262918 262992 + Thr GGT [ENA] ¡û
>W1810494787 QBFF01000021 Alphaproteobacteria Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF] 22760 22686 - Thr GGT [ENA] ¡û
>W1810504312 QBKU01000006 Alphaproteobacteria Sulfitobacter mediterraneus DSM 12244 [QBKU] 161363 161437 + Thr GGT [ENA] ¡û
>W1810532419 QCYG01000005 Alphaproteobacteria Thalassorhabdomicrobium marinisediminis BH-SD16 [QCYG] 145382 145456 + Thr GGT [ENA] ¡û
>W1810672101 QJTE01000003 Alphaproteobacteria Pseudoroseicyclus aestuarii CECT 9025 [QJTE] 538638 538712 + Thr GGT [ENA] ¡û
>W1810676774 QKMF01000027 Alphaproteobacteria Pelagimonas varians DSM 23678 [QKMF] 16057 16131 + Thr GGT [ENA] ¡û
>W1810707327 QNGB01000013 Alphaproteobacteria Roseovarius sp. TE539 [QNGB] 62328 62402 + Thr GGT [ENA] ¡û
>W1810724977 QOCE01000017 Alphaproteobacteria Phaeobacter gallaeciensis C3M10 [QOCE] 79634 79560 - Thr GGT [ENA] ¡û
>W1810914904 QVQC01000049 Alphaproteobacteria Rhodobacteraceae bacterium W635 [QVQC] 19240 19314 + Thr GGT [ENA] ¡û
>SRA1016626 SRR027368.22838 Analysis of diversity of coastal microbial mats using 454 technology (SRP001219) 60 134 + Thr GGT [SRA]
>W1610092555 CYPS01000067 Alphaproteobacteria Ruegeria atlantica [CYPS] 154954 154880 - Thr GGT [ENA] ¡û
>W1610092845 CYSD01000001 Alphaproteobacteria Tritonibacter multivorans [CYSD] 10894 10968 + Thr GGT [ENA] ¡û
>W1610093031 CYSG01000027 Alphaproteobacteria Phaeobacter sp. CECT 5382 [CYSG] 480 406 - Thr GGT [ENA] ¡û
>W1610630920 LIKT01000037 Alphaproteobacteria Phaeobacter sp. 11ANDIMAR09 [LIKT] 12520 12594 + Thr GGT [ENA] ¡û
>W1710095810 CYPS01000067 Alphaproteobacteria Ruegeria atlantica [CYPS] 154954 154880 - Thr GGT [ENA] ¡û
>W1710096100 CYSD01000001 Alphaproteobacteria Tritonibacter multivorans [CYSD] 10894 10968 + Thr GGT [ENA] ¡û
>W1710548375 FODS01000016 Alphaproteobacteria Salinihabitans flavidus [FODS] 35231 35157 - Thr GGT [ENA] ¡û
>W1710558737 FOMC01000024 Alphaproteobacteria Tritonibacter multivorans [FOMC] 11004 11078 + Thr GGT [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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