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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780106 (19 seq.)
>W1710866799
LMHT01000032
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
122805
122878
+
Gly
TCC
[ENA]
¡û
>W131218251
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
739335
739262
-
Gly
TCC
[ENA]
¡û
>W131230694
AUHV01000003
Alphaproteobacteria
Maritalea myrionectae DSM 19524 [AUHV]
11442
11369
-
Gly
TCC
[ENA]
¡û
>WENV180032796
FTKD01001150
[FTKD] metagenome; soil
5177
5250
+
Gly
TCC
[ENA]
¢þ
>WENV180291551
OBIV01081306
[OBIV] soil metagenome; Clay
215
288
+
Gly
TCC
[ENA]
¢þ
>WENV170962148
MRWF01007135
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
247
174
-
Gly
TCC
[ENA]
¢þ
>WENV170962625
MRWF01021870
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2773
2700
-
Gly
TCC
[ENA]
¢þ
>WENV170963244
MRWG01000060
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
97385
97458
+
Gly
TCC
[ENA]
¢þ
>WENV170964555
MRWG01018823
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
952
1025
+
Gly
TCC
[ENA]
¢þ
>C191018797
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
1662451
1662524
+
Gly
TCC
-
¡û
>C191157371
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
496915
496988
+
Gly
TCC
-
¡û
>W141551945
JHOF01000026
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
165637
165710
+
Gly
TCC
[ENA]
¡û
>W1911398105
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1840208
1840135
-
Gly
TCC
[ENA]
¡û
>W1911760353
QWTZ01000006
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
353
280
-
Gly
TCC
[ENA]
¡û
>SRA1004052
SRR002328.117571
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
126
53
-
Gly
TCC
[SRA]
>W1810594040
QFYP01000001
Alphaproteobacteria
Phenylobacterium hankyongense HKS-05 [QFYP]
680
607
-
Gly
TCC
[ENA]
¡û
>SRA1016594
SRR027367.2713
Analysis of diversity of coastal microbial mats using 454 technology (SRP001219)
186
113
-
Gly
TCC
[SRA]
>C161089834
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1642466
1642393
-
Gly
TCC
[Ensembl]
¡û
>W1610729145
LMHT01000032
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
122805
122878
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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