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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = AAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281288 (7 seq.)
>R05100142
AP008218
Plant
Oryza sativa Japonica Group
25952047
25951971
-
Val
AAC
[RAP-DB]
¡û
>R05100327
AP008210
Plant
Oryza sativa Japonica Group
31941896
31941972
+
Val
AAC
[RAP-DB]
¡û
>R05100383
AP008211
Plant
Oryza sativa Japonica Group
22719889
22719965
+
Val
AAC
[RAP-DB]
¡û
>R05100428
AP008212
Plant
Oryza sativa Japonica Group
5948226
5948302
+
Val
AAC
[RAP-DB]
¡û
>R05100494
AP008214
Plant
Oryza sativa Japonica Group
5848458
5848534
+
Val
AAC
[RAP-DB]
¡û
>WENV11100094
ADWX01131754
Ant fungus garden metagenome, Atta colombica fungus garden
42
116
+
Val
AAC
[ENA]
¡û
>WENV11100113
ADWX01200380
Ant fungus garden metagenome, Atta colombica fungus garden
228
155
-
Val
AAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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