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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = CGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470165 (7 seq.)
>WENV181168372
OEIU01313112
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
135
210
+
Ala
CGC
[ENA]
¢þ
>WENV183663373
ORJL010278172
[ORJL] groundwater metagenome; groundwater
144
219
+
Ala
CGC
[ENA]
¢þ
>WENV183687580
ORMF011164558
[ORMF] groundwater metagenome; groundwater
535
460
-
Ala
CGC
[ENA]
¢þ
>W1911148393
NPEU01000615
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
1031
956
-
Ala
CGC
[ENA]
¡û
>W1911148479
NPEW01000335
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
3239
3314
+
Ala
CGC
[ENA]
¡û
>W1911148492
NPEX01000019
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
39476
39401
-
Ala
CGC
[ENA]
¡û
>WENV11100190
ADWX01333486
Ant fungus garden metagenome, Atta colombica fungus garden
253
178
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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