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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = CGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.714685 (1 seq.)
>WENV11100106
ADWX01178579
Ant fungus garden metagenome, Atta colombica fungus garden
85
11
-
Thr
CGT
[ENA]
¡û
Identical group No.714697 (1 seq.)
>WENV11100171
ADWX01292354
Ant fungus garden metagenome, Atta colombica fungus garden
1617
1546
-
Thr
CGT
[ENA]
¡û
Identical group No.714700 (2 seq.)
>R05100435
AP008212
Plant
Oryza sativa Japonica Group
31876241
31876317
+
Thr
CGT
[RAP-DB]
¡û
>WENV11100182
ADWX01314193
Ant fungus garden metagenome, Atta colombica fungus garden
170
241
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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