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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = CTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254979 (1 seq.)
>WENV11100086
ADWX01095575
Ant fungus garden metagenome, Atta colombica fungus garden
113
38
-
Glu
CTC
[ENA]
¡û
Identical group No.675825 (8 seq.)
>W1711573143
MNCN01000098
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_55_10 [MNCN]
11532
11460
-
Glu
CTC
[ENA]
¡û
>W1711573147
MNCN01000107
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_55_10 [MNCN]
5419
5347
-
Glu
CTC
[ENA]
¡û
>W1711573510
MNDH01000040
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls [MNDH]
9267
9195
-
Glu
CTC
[ENA]
¡û
>WENV180308364
OBJR01000025
[OBJR] soil metagenome; soil
2616
2689
+
Glu
CTC
[ENA]
¢þ
>WENV180327705
OBKT01402652
[OBKT] soil metagenome; soil
179
105
-
Glu
CTC
[ENA]
¢þ
>WENV181184839
OEKT01000221
[OEKT] metagenome; 1998
795
868
+
Glu
CTC
[ENA]
¢þ
>WENV170999120
MWWJ01241656
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
160
86
-
Glu
CTC
[ENA]
¢þ
>WENV11100173
ADWX01296606
Ant fungus garden metagenome, Atta colombica fungus garden
218
292
+
Glu
CTC
[ENA]
¡û
Identical group No.714691 (1 seq.)
>WENV11100131
ADWX01212367
Ant fungus garden metagenome, Atta colombica fungus garden
1876
1949
+
Glu
CTC
[ENA]
¡û
Identical group No.714696 (2 seq.)
>WENV11100170
ADWX01283585
Ant fungus garden metagenome, Atta colombica fungus garden
557
486
-
Glu
CTC
[ENA]
¡û
>WENV11100172
ADWX01294245
Ant fungus garden metagenome, Atta colombica fungus garden
242
171
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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