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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = CTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.554072 (1 seq.)
>WENV11100058
ADWX01027497
Ant fungus garden metagenome, Atta colombica fungus garden
253
180
-
Lys
CTT
[ENA]
¡û
Identical group No.554074 (1 seq.)
>WENV11100078
ADWX01069449
Ant fungus garden metagenome, Atta colombica fungus garden
181
106
-
Lys
CTT
[ENA]
¡û
Identical group No.554086 (1 seq.)
>WENV11100194
ADWX01351021
Ant fungus garden metagenome, Atta colombica fungus garden
94
168
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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