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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154391 (19 seq.)
>W1711503706
MKTV01000065
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
154939
155024
+
Leu
GAG
[ENA]
¡û
>WENV181192920
OEPS011212165
[OEPS] soil metagenome; soil
109
194
+
Leu
GAG
[ENA]
¢þ
>W08009493
ABPH01000002
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
269607
269692
+
Leu
GAG
[ENA]
¡û
>W141200338
AYXS01000001
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
348604
348519
-
Leu
GAG
[ENA]
¡û
>W141226055
BAJT01000003
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
71469
71554
+
Leu
GAG
[ENA]
¡û
>W141226147
BAJV01000002
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
220972
221057
+
Leu
GAG
[ENA]
¡û
>W141227253
BAKW01000003
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
114630
114545
-
Leu
GAG
[ENA]
¡û
>W141247933
CBLX010000009
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
217595
217680
+
Leu
GAG
[ENA]
¡û
>C08005248
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
1934233
1934318
+
Leu
GAG
[Ensembl]
¡û
>W1910181778
BJMI01000008
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
56216
56301
+
Leu
GAG
[ENA]
¡û
>C09106283
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
136027
136112
+
Leu
GAG
[Ensembl]
¡û
>W1911597837
PNQZ01000059
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
61146
61061
-
Leu
GAG
[ENA]
¡û
>W1810763156
QQAW01000009
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
56310
56395
+
Leu
GAG
[ENA]
¡û
>WENV11100095
ADWX01132822
Ant fungus garden metagenome, Atta colombica fungus garden
302
387
+
Leu
GAG
[ENA]
¡û
>C161001083
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1270080
1270165
+
Leu
GAG
[Ensembl]
¡û
>W1610040674
BALE01000040
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
23176
23261
+
Leu
GAG
[ENA]
¡û
>W1610041004
BANB01000178
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
2520
2604
+
Leu
GAG
[ENA]
¡û
>W1710037872
BALE01000040
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
23176
23261
+
Leu
GAG
[ENA]
¡û
>W1710038202
BANB01000178
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
2520
2604
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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