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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = GAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280359 (57 seq.)
>W1711573153
MNCO01000002
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_54_12 [MNCO]
3980
4053
+
Ile
GAT
[ENA]
¡û
>W1711573530
MNDI01000056
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_2_54_15 [MNDI]
6224
6151
-
Ile
GAT
[ENA]
¡û
>W1711575285
MNHY01000016
Verrucomicrobiota
Verrucomicrobia bacterium 13_1_20CM_54_28 [MNHY]
5154
5081
-
Ile
GAT
[ENA]
¡û
>W1711575417
MNIL01000152
Verrucomicrobiota
Verrucomicrobia bacterium 13_1_20CM_4_54_11 [MNIL]
5469
5396
-
Ile
GAT
[ENA]
¡û
>W131164408
ARAS01000058
Verrucomicrobiota
Verrucomicrobium sp. 3C [ARAS]
27961
28037
+
Ile
GAT
[ENA]
¡û
>WENV180030646
FTJN01001927
[FTJN] metagenome; soil
607
683
+
Ile
GAT
[ENA]
¢þ
>WENV180115092
OAPS01122853
[OAPS] marine metagenome; sea water
214
288
+
Ile
GAT
[ENA]
¢þ
>WENV180264571
OBEQ011582702
[OBEQ] groundwater metagenome; groundwater
264
191
-
Ile
GAT
[ENA]
¢þ
>WENV180327363
OBKT01078627
[OBKT] soil metagenome; soil
127
54
-
Ile
GAT
[ENA]
¢þ
>WENV180636047
OCRE01046665
[OCRE] marine metagenome; Seawater
218
144
-
Ile
GAT
[ENA]
¢þ
>WENV180689901
OCZB010219435
[OCZB] metagenome; Oyster Gut Contents
227
153
-
Ile
GAT
[ENA]
¢þ
>WENV181123189
OEFO01157610
[OEFO] soil metagenome; soil
167
93
-
Ile
GAT
[ENA]
¢þ
>WENV181165496
OEIS01008588
[OEIS] soil metagenome; soil
274
201
-
Ile
GAT
[ENA]
¢þ
>WENV181185884
OEMD01000508
[OEMD] metagenome; 1998
4225
4152
-
Ile
GAT
[ENA]
¢þ
>WENV181311130
OFJB01000048
[OFJB] sludge metagenome; sludge
81355
81431
+
Ile
GAT
[ENA]
¢þ
>WENV181377586
OFRA01019804
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1032
958
-
Ile
GAT
[ENA]
¢þ
>WENV181385277
OFRI01056378
[OFRI] wastewater metagenome; Exp Tend VB 90WW
458
384
-
Ile
GAT
[ENA]
¢þ
>WENV181386888
OFRL01021945
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
119
192
+
Ile
GAT
[ENA]
¢þ
>WENV181837638
OGVL01000193
[OGVL] freshwater metagenome; freshwater
3083
3156
+
Ile
GAT
[ENA]
¢þ
>WENV181837907
OGVL01013829
[OGVL] freshwater metagenome; freshwater
338
265
-
Ile
GAT
[ENA]
¢þ
>WENV181840604
OGVP01004122
[OGVP] freshwater metagenome; freshwater
1744
1817
+
Ile
GAT
[ENA]
¢þ
>WENV181841491
OGVS01000088
[OGVS] freshwater metagenome; freshwater
3015
3088
+
Ile
GAT
[ENA]
¢þ
>WENV181847590
OGVY01040486
[OGVY] freshwater metagenome; freshwater
434
361
-
Ile
GAT
[ENA]
¢þ
>WENV181847595
OGVY01040627
[OGVY] freshwater metagenome; freshwater
432
359
-
Ile
GAT
[ENA]
¢þ
>WENV181850036
OGWC01000207
[OGWC] freshwater metagenome; freshwater
3103
3176
+
Ile
GAT
[ENA]
¢þ
>WENV181852668
OGWH01000251
[OGWH] freshwater metagenome; freshwater
2911
2984
+
Ile
GAT
[ENA]
¢þ
>WENV181853756
OGWJ01000165
[OGWJ] freshwater metagenome; freshwater
3654
3581
-
Ile
GAT
[ENA]
¢þ
>WENV181855120
OGWL01000733
[OGWL] freshwater metagenome; freshwater
1064
1137
+
Ile
GAT
[ENA]
¢þ
>WENV181856020
OGWM01011670
[OGWM] freshwater metagenome; freshwater
489
563
+
Ile
GAT
[ENA]
¢þ
>W141278654
JAFS01000001
Verrucomicrobiota
Verrucomicrobia bacterium LP2A [JAFS]
67622
67698
+
Ile
GAT
[ENA]
¡û
>WENV020343
AACY020552351
Marine microbial communities from Global Ocean Sampling (GOS)
1925
1849
-
Ile
GAT
[ENA]
>WENV170564510
CZKQ01000170
[CZKQ] soil metagenome genome assembly CiPEHR-AK-2010-FBin.5, contig:; soil
919
995
+
Ile
GAT
[ENA]
¢þ
>WENV170571657
FLOH01000248
[FLOH] marine metagenome; water
51335
51261
-
Ile
GAT
[ENA]
¢þ
>WENV170572170
FLOH01000574
[FLOH] marine metagenome; water
37324
37248
-
Ile
GAT
[ENA]
¢þ
>WENV170626288
FUWD013218221
[FUWD] metagenome; unknown
351
425
+
Ile
GAT
[ENA]
¢þ
>WENV170662112
JXWV01201913
[JXWV] soil metagenome; rice field; organic FYM Plot
91
17
-
Ile
GAT
[ENA]
¢þ
>WENV170981572
MWVT01134217
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
247
173
-
Ile
GAT
[ENA]
¢þ
>WENV170982120
MWVU01016577
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
251
178
-
Ile
GAT
[ENA]
¢þ
>WENV170982932
MWVV01001202
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
4819
4746
-
Ile
GAT
[ENA]
¢þ
>WENV170983968
MWVV01133716
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
398
472
+
Ile
GAT
[ENA]
¢þ
>WENV170985558
MWVW01147784
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
108
35
-
Ile
GAT
[ENA]
¢þ
>WENV170986502
MWVX01045712
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
186
113
-
Ile
GAT
[ENA]
¢þ
>WENV170986722
MWVX01071163
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
971
898
-
Ile
GAT
[ENA]
¢þ
>WENV170987832
MWVX01290975
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
17
91
+
Ile
GAT
[ENA]
¢þ
>WENV170990354
MWWA01002158
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1181
1255
+
Ile
GAT
[ENA]
¢þ
>WENV170992926
MWWB01129024
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
342
416
+
Ile
GAT
[ENA]
¢þ
>WENV170993038
MWWB01164771
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
94
168
+
Ile
GAT
[ENA]
¢þ
>WENV170995405
MWWF01004953
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
2372
2299
-
Ile
GAT
[ENA]
¢þ
>WENV170996832
MWWF01426550
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
205
131
-
Ile
GAT
[ENA]
¢þ
>WENV170998230
MWWI01058005
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
202
128
-
Ile
GAT
[ENA]
¢þ
>W1910647275
LXQC01000154
Verrucomicrobiota
Methylacidiphilum caldifontis Phi [LXQC]
36123
36048
-
Ile
GAT
[ENA]
¡û
>W1911494002
OBKC01000162
Unclassified
bacterium [OBKC]
353
278
-
Ile
GAT
[ENA]
¡û
>WENV11100130
ADWX01210740
Ant fungus garden metagenome, Atta colombica fungus garden
199
126
-
Ile
GAT
[ENA]
¡û
>W1610626046
LIBO01000080
Verrucomicrobiota
Verrucomicrobia subdivision 6 bacterium BACL9 MAG-120507-bin52 [LIBO]
3194
3270
+
Ile
GAT
[ENA]
¡û
>W1610627315
LIDN01000150
Verrucomicrobiota
Verrucomicrobia subdivision 6 bacterium BACL9 MAG-120924-bin69 [LIDN]
2850
2774
-
Ile
GAT
[ENA]
¡û
>W1710757173
LIBO01000080
Verrucomicrobiota
Verrucomicrobia subdivision 6 bacterium BACL9 MAG-120507-bin52 [LIBO]
3194
3270
+
Ile
GAT
[ENA]
¡û
>W1710758442
LIDN01000150
Verrucomicrobiota
Verrucomicrobia subdivision 6 bacterium BACL9 MAG-120924-bin69 [LIDN]
2850
2774
-
Ile
GAT
[ENA]
¡û
Identical group No.806971 (1 seq.)
>WENV11100159
ADWX01259091
Ant fungus garden metagenome, Atta colombica fungus garden
1858
1931
+
Pseudo
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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