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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = GCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.471023 (16 seq.)
>W1711391514
MELQ01000076
Actinomycetota
Actinobacteria bacterium RBG_16_68_12 [MELQ]
8523
8448
-
Arg
GCG
[ENA]
¡û
>WENV180320764
OBKQ01017347
[OBKQ] soil metagenome; Clay
214
287
+
Arg
GCG
[ENA]
¢þ
>WENV180327777
OBKT01487852
[OBKT] soil metagenome; soil
13
86
+
Arg
GCG
[ENA]
¢þ
>WENV180350512
OBLQ010001975
[OBLQ] soil metagenome; soil
7501
7573
+
Arg
GCG
[ENA]
¢þ
>WENV180692893
OCZS010838794
[OCZS] soil metagenome; soil
5
77
+
Arg
GCG
[ENA]
¢þ
>WENV181123059
OEFO01066113
[OEFO] soil metagenome; soil
40
113
+
Arg
GCG
[ENA]
¢þ
>WENV181155305
OEID01088417
[OEID] soil metagenome; soil
179
251
+
Arg
GCG
[ENA]
¢þ
>WENV181165521
OEIS01016133
[OEIS] soil metagenome; soil
397
324
-
Arg
GCG
[ENA]
¢þ
>WENV181184367
OEKB01000035
[OEKB] metagenome; 1998
2830
2758
-
Arg
GCG
[ENA]
¢þ
>WENV181184751
OEKP01000845
[OEKP] metagenome; 1998
1657
1729
+
Arg
GCG
[ENA]
¢þ
>WENV181185407
OELK01001747
[OELK] metagenome; 1998
1138
1066
-
Arg
GCG
[ENA]
¢þ
>WENV181288144
OFGY01015224
[OFGY] soil metagenome; Clay
447
519
+
Arg
GCG
[ENA]
¢þ
>WENV181292406
OFHE01007309
[OFHE] soil metagenome; Clay
360
287
-
Arg
GCG
[ENA]
¢þ
>WENV181293780
OFHG01024348
[OFHG] soil metagenome; Clay
852
780
-
Arg
GCG
[ENA]
¢þ
>WENV183724298
PJQE01005471
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
1360
1433
+
Arg
GCG
[ENA]
¢þ
>WENV11100063
ADWX01046650
Ant fungus garden metagenome, Atta colombica fungus garden
232
159
-
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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