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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = GGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458566 (22 seq.)
>W1711573406
MNDC01000115
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
8278
8353
+
Ala
GGC
[ENA]
¡û
>W1711573446
MNDE01000060
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
15516
15591
+
Ala
GGC
[ENA]
¡û
>W1711573875
MNEA01000088
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
2710
2785
+
Ala
GGC
[ENA]
¡û
>W1711573890
MNEB01000043
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_12 [MNEB]
19540
19465
-
Ala
GGC
[ENA]
¡û
>W1711575676
MNJF01000102
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
9447
9372
-
Ala
GGC
[ENA]
¡û
>WENV180248963
OBEQ010157387
[OBEQ] groundwater metagenome; groundwater
290
215
-
Ala
GGC
[ENA]
¢þ
>WENV180256595
OBEQ010834438
[OBEQ] groundwater metagenome; groundwater
576
501
-
Ala
GGC
[ENA]
¢þ
>WENV180295104
OBIZ01022127
[OBIZ] soil metagenome; soil
146
71
-
Ala
GGC
[ENA]
¢þ
>WENV180320642
OBKQ01002857
[OBKQ] soil metagenome; Clay
967
1042
+
Ala
GGC
[ENA]
¢þ
>WENV180350379
OBLQ010000424
[OBLQ] soil metagenome; soil
2201
2126
-
Ala
GGC
[ENA]
¢þ
>WENV181291981
OFHD01014868
[OFHD] soil metagenome; Clay
657
732
+
Ala
GGC
[ENA]
¢þ
>WENV181293416
OFHG01003265
[OFHG] soil metagenome; Clay
3791
3866
+
Ala
GGC
[ENA]
¢þ
>WENV181296985
OFHK01003665
[OFHK] soil metagenome; Clay
529
454
-
Ala
GGC
[ENA]
¢þ
>WENV183661034
ORJL010076564
[ORJL] groundwater metagenome; groundwater
2484
2409
-
Ala
GGC
[ENA]
¢þ
>WENV183665726
ORJL010486692
[ORJL] groundwater metagenome; groundwater
227
302
+
Ala
GGC
[ENA]
¢þ
>WENV183667356
ORJL010641734
[ORJL] groundwater metagenome; groundwater
589
664
+
Ala
GGC
[ENA]
¢þ
>WENV183679027
ORMF010008807
[ORMF] groundwater metagenome; groundwater
48994
49069
+
Ala
GGC
[ENA]
¢þ
>WENV183690718
ORMF011638332
[ORMF] groundwater metagenome; groundwater
5339
5264
-
Ala
GGC
[ENA]
¢þ
>WENV183724612
PJQE01035173
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
121
196
+
Ala
GGC
[ENA]
¢þ
>W1910760414
MNFR01000007
Unclassified
archaeon 13_1_40CM_4_53_4 [MNFR]
15087
15014
-
Ala
GGC
[ENA]
¡û
>W1810209742
POGW01000115
Gammaproteobacteria
Pseudomonas sp. FW305-124 [POGW]
45
120
+
Ala
GGC
[ENA]
¡û
>WENV11100105
ADWX01178022
Ant fungus garden metagenome, Atta colombica fungus garden
170
245
+
Ala
GGC
[ENA]
¡û
Identical group No.554075 (1 seq.)
>WENV11100080
ADWX01078683
Ant fungus garden metagenome, Atta colombica fungus garden
97
22
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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