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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = GTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326923 (9 seq.)
>WENV180653031
OCVV010145927
[OCVV] gut metagenome; gut
268
194
-
His
GTG
[ENA]
¢þ
>WENV180653032
OCVV010145927
[OCVV] gut metagenome; gut
268
194
-
His
GTG
[ENA]
¢þ
>WENV181574587
OGJT01001061
[OGJT] metagenome; Human gut stool
6892
6818
-
His
GTG
[ENA]
¢þ
>WENV170659849
JXWS01007426
[JXWS] soil metagenome; rice field; elevated CO2
1281
1356
+
His
GTG
[ENA]
¢þ
>CHL1810018927
KR262889
Viridiplantae
Dieffenbachia seguine (KR262889)
498
424
-
His
GTG
[ENA]
¡û
>CHL1810034626
KX657870
Viridiplantae
Haberlea rhodopensis (KX657870)
118
44
-
His
GTG
[ENA]
¡û
>CHL1810039847
KY197962
Viridiplantae
Camptotheca acuminata (KY197962)
89349
89423
+
His
GTG
[ENA]
¡û
>CHL1810054983
MF990291
Viridiplantae
Boehmeria umbrosa (MF990291)
4695
4769
+
His
GTG
[ENA]
¡û
>WENV11100176
ADWX01301453
Ant fungus garden metagenome, Atta colombica fungus garden
87
12
-
His
GTG
[ENA]
¡û
Identical group No.363899 (7 seq.)
>CHL1810024691
KU204901
Viridiplantae
Meliosma aff. cuneifolia Moore 333 (KU204901)
79
5
-
His
GTG
[ENA]
¡û
>CHL1810024719
KU204902
Viridiplantae
Sabia yunnanensis (KU204902)
80
6
-
His
GTG
[ENA]
¡û
>CHL1810035455
KX775962
Viridiplantae
Schoepfia jasminodora (KX775962)
84354
84428
+
His
GTG
[ENA]
¡û
>CHL1810035460
KX775962
Viridiplantae
Schoepfia jasminodora (KX775962)
118558
118484
-
His
GTG
[ENA]
¡û
>CHL1810040858
KY412195
Viridiplantae
Bergenia scopulosa (KY412195)
156041
155967
-
His
GTG
[ENA]
¡û
>CHL1810051278
MF136513
Viridiplantae
Alnus nitida (MF136513)
77
3
-
His
GTG
[ENA]
¡û
>WENV11100123
ADWX01208228
Ant fungus garden metagenome, Atta colombica fungus garden
131
56
-
His
GTG
[ENA]
¡û
Identical group No.554082 (3 seq.)
>WENV170000306
AEWW01007278
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
4
79
+
His
GTG
[ENA]
¢þ
>WENV11100137
ADWX01226107
Ant fungus garden metagenome, Atta colombica fungus garden
728
653
-
Pseudo
GTG
[ENA]
¡û
>WENV11100664
AEWW01007278
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
4
79
+
Pseudo
GTG
[ENA]
¡û
Identical group No.714701 (5 seq.)
>WENV183681884
ORMF010371178
[ORMF] groundwater metagenome; groundwater
7642
7716
+
His
GTG
[ENA]
¢þ
>WENV183691894
ORMF011836486
[ORMF] groundwater metagenome; groundwater
650
576
-
His
GTG
[ENA]
¢þ
>W1910697463
MEKT01000047
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
7159
7233
+
His
GTG
[ENA]
¡û
>W1911494008
OBKC01000776
Unclassified
bacterium [OBKC]
367
293
-
His
GTG
[ENA]
¡û
>WENV11100188
ADWX01330749
Ant fungus garden metagenome, Atta colombica fungus garden
162
236
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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