This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = TAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4489 (3 seq.)
>WENV170000467
AEWW01037345
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
56
151
+
Leu
TAA
[ENA]
¢þ
>WENV11100167
ADWX01271733
Ant fungus garden metagenome, Atta colombica fungus garden
38
130
+
Leu
TAA
[ENA]
¡û
>WENV11100825
AEWW01037345
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
56
151
+
Leu
TAA
[ENA]
¡û
Identical group No.132949 (1 seq.)
>WENV11100114
ADWX01203245
Ant fungus garden metagenome, Atta colombica fungus garden
570
487
-
Pseudo
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK