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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = TCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254978 (1 seq.)
>WENV11100077
ADWX01069449
Ant fungus garden metagenome, Atta colombica fungus garden
374
297
-
Arg
TCG
[ENA]
¡û
Identical group No.363888 (2 seq.)
>WENV180353853
OBLQ011118802
[OBLQ] soil metagenome; soil
225
150
-
Arg
TCG
[ENA]
¢þ
>WENV11100057
ADWX01027497
Ant fungus garden metagenome, Atta colombica fungus garden
351
277
-
Arg
TCG
[ENA]
¡û
Identical group No.714695 (1 seq.)
>WENV11100165
ADWX01269777
Ant fungus garden metagenome, Atta colombica fungus garden
10194
10121
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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