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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = TCT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.363895 (1 seq.)
>WENV11100090
ADWX01118423
Ant fungus garden metagenome, Atta colombica fungus garden
165
89
-
Arg
TCT
[ENA]
¡û
Identical group No.554083 (1 seq.)
>WENV11100158
ADWX01257323
Ant fungus garden metagenome, Atta colombica fungus garden
55
129
+
Arg
TCT
[ENA]
¡û
Identical group No.684370 (12 seq.)
>CHL1810010476
KF572029
Viridiplantae
Lagerstroemia subcostata (KF572029)
9142
9213
+
Arg
TCT
[ENA]
¡û
>CHL1810018996
KR296789
Viridiplantae
Astragalus mongholicus var. nakaianus (KR296789)
50987
50916
-
Arg
TCT
[ENA]
¡û
>CHL1810020886
KT358807
Viridiplantae
Lagerstroemia fauriei (KT358807)
9152
9223
+
Arg
TCT
[ENA]
¡û
>CHL1810027227
KU666554
Viridiplantae
Astragalus mongholicus (KU666554)
50952
50881
-
Arg
TCT
[ENA]
¡û
>CHL1810027709
KU821692
Viridiplantae
Lagerstroemia speciosa (KU821692)
9137
9208
+
Arg
TCT
[ENA]
¡û
>CHL1810027959
KU885923
Viridiplantae
Lagerstroemia guilinensis (KU885923)
9237
9308
+
Arg
TCT
[ENA]
¡û
>CHL1810032655
KX263727
Viridiplantae
Lagerstroemia indica (KX263727)
9231
9302
+
Arg
TCT
[ENA]
¡û
>CHL1810035336
KX765488
Viridiplantae
Lagerstroemia floribunda (KX765488)
9000
9071
+
Arg
TCT
[ENA]
¡û
>CHL1810037020
KX852427
Viridiplantae
Lagerstroemia intermedia (KX852427)
9109
9180
+
Arg
TCT
[ENA]
¡û
>CHL1810044774
KY635883
Viridiplantae
Punica granatum (KY635883)
10540
10611
+
Arg
TCT
[ENA]
¡û
>CHL1810052118
MF286764
Viridiplantae
Lessertia frutescens (MF286764)
50639
50568
-
Arg
TCT
[ENA]
¡û
>WENV11100162
ADWX01259826
Ant fungus garden metagenome, Atta colombica fungus garden
2412
2341
-
Arg
TCT
[ENA]
¡û
Identical group No.714684 (1 seq.)
>WENV11100104
ADWX01176010
Ant fungus garden metagenome, Atta colombica fungus garden
436
363
-
Arg
TCT
[ENA]
¡û
Identical group No.714686 (1 seq.)
>WENV11100109
ADWX01180947
Ant fungus garden metagenome, Atta colombica fungus garden
166
93
-
Arg
TCT
[ENA]
¡û
Identical group No.714689 (1 seq.)
>WENV11100121
ADWX01204899
Ant fungus garden metagenome, Atta colombica fungus garden
10692
10764
+
Pseudo
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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