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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = TGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3878 (9 seq.)
>CHL1810010498
KF572029
Viridiplantae
Lagerstroemia subcostata (KF572029)
34736
34644
-
Ser
TGA
[ENA]
¡û
>CHL1810020908
KT358807
Viridiplantae
Lagerstroemia fauriei (KT358807)
34774
34682
-
Ser
TGA
[ENA]
¡û
>CHL1810027731
KU821692
Viridiplantae
Lagerstroemia speciosa (KU821692)
35059
34967
-
Ser
TGA
[ENA]
¡û
>CHL1810027980
KU885923
Viridiplantae
Lagerstroemia guilinensis (KU885923)
34867
34775
-
Ser
TGA
[ENA]
¡û
>CHL1810032677
KX263727
Viridiplantae
Lagerstroemia indica (KX263727)
34861
34769
-
Ser
TGA
[ENA]
¡û
>CHL1810035358
KX765488
Viridiplantae
Lagerstroemia floribunda (KX765488)
34704
34612
-
Ser
TGA
[ENA]
¡û
>CHL1810037042
KX852427
Viridiplantae
Lagerstroemia intermedia (KX852427)
35082
34990
-
Ser
TGA
[ENA]
¡û
>CHL1810044796
KY635883
Viridiplantae
Punica granatum (KY635883)
38281
38189
-
Ser
TGA
[ENA]
¡û
>WENV11100126
ADWX01209506
Ant fungus garden metagenome, Atta colombica fungus garden
4642
4550
-
Ser
TGA
[ENA]
¡û
Identical group No.38183 (1 seq.)
>WENV11100157
ADWX01254754
Ant fungus garden metagenome, Atta colombica fungus garden
1295
1208
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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