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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ant fungus garden metagenome, Atta colombica fungus garden
Anticodon = TGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.496083 (13 seq.)
>W1711573152
MNCO01000002
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_54_12 [MNCO]
3805
3877
+
Ala
TGC
[ENA]
¡û
>W1711573529
MNDI01000056
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_2_54_15 [MNDI]
6399
6327
-
Ala
TGC
[ENA]
¡û
>W1711575284
MNHY01000016
Verrucomicrobiota
Verrucomicrobia bacterium 13_1_20CM_54_28 [MNHY]
5329
5257
-
Ala
TGC
[ENA]
¡û
>W1711575416
MNIL01000152
Verrucomicrobiota
Verrucomicrobia bacterium 13_1_20CM_4_54_11 [MNIL]
5644
5572
-
Ala
TGC
[ENA]
¡û
>WENV180308409
OBJR01002836
[OBJR] soil metagenome; soil
854
928
+
Ala
TGC
[ENA]
¢þ
>WENV180327362
OBKT01078627
[OBKT] soil metagenome; soil
293
220
-
Ala
TGC
[ENA]
¢þ
>WENV181123043
OEFO01052232
[OEFO] soil metagenome; soil
85
157
+
Ala
TGC
[ENA]
¢þ
>WENV181163611
OEIQ01121541
[OEIQ] soil metagenome; soil
199
125
-
Ala
TGC
[ENA]
¢þ
>WENV181165495
OEIS01008588
[OEIS] soil metagenome; soil
447
375
-
Ala
TGC
[ENA]
¢þ
>WENV181185883
OEMD01000508
[OEMD] metagenome; 1998
4504
4432
-
Ala
TGC
[ENA]
¢þ
>WENV170013871
AVBS01004604
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
220
148
-
Ala
TGC
[ENA]
¢þ
>WENV170564511
CZKQ01000170
[CZKQ] soil metagenome genome assembly CiPEHR-AK-2010-FBin.5, contig:; soil
4859
4787
-
Ala
TGC
[ENA]
¢þ
>WENV11100129
ADWX01210740
Ant fungus garden metagenome, Atta colombica fungus garden
394
322
-
Ala
TGC
[ENA]
¡û
Identical group No.714699 (6 seq.)
>W1711631705
MPRN01000060
Gammaproteobacteria
Solemya velum gill symbiont [MPRN]
712
785
+
Ala
TGC
[ENA]
¡û
>WENV180111221
OAPN01042970
[OAPN] marine metagenome; 2011
30
102
+
Ala
TGC
[ENA]
¢þ
>WENV181120843
OEFK01080198
[OEFK] marine metagenome; ENVO:00002010 seawater
25
97
+
Ala
TGC
[ENA]
¢þ
>WENV181232140
OFEL01046998
[OFEL] insect metagenome; insect
189
260
+
Ala
TGC
[ENA]
¢þ
>WENV181232171
OFEL01083505
[OFEL] insect metagenome; insect
509
580
+
Ala
TGC
[ENA]
¢þ
>WENV11100179
ADWX01309740
Ant fungus garden metagenome, Atta colombica fungus garden
39
110
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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