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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = CCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.662416 (5 seq.)
>WENV016664
AACY020467897
Marine microbial communities from Global Ocean Sampling (GOS)
1668
1744
+
Arg
CCT
[ENA]
>WENV180392638
OBPP01000722
[OBPP] marine metagenome; ENVO:00002042
472
398
-
Arg
CCT
[ENA]
¢þ
>WENV180393729
OBPR01003631
[OBPR] marine metagenome; ENVO:00002042
651
577
-
Arg
CCT
[ENA]
¢þ
>SRA1000071
SRR000285.38996
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
21
95
+
Arg
CCT
[SRA]
>WENV058490
AACY023330806
Marine microbial communities from Global Ocean Sampling (GOS)
596
520
-
Arg
CCT
[ENA]
Identical group No.685899 (1 seq.)
>SRA1000129
SRR000288.20127
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
84
13
-
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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