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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467771 (21 seq.)
>WENV180103062
OAPA01000785
[OAPA] marine metagenome; ENVO:00002010
1918
1845
-
Thr
CGT
[ENA]
¢þ
>WENV180208964
OBAK01001030
[OBAK] marine metagenome; ENVO.00002150
91
16
-
Thr
CGT
[ENA]
¢þ
>WENV180209568
OBAL01004376
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1120
1193
+
Thr
CGT
[ENA]
¢þ
>WENV180212406
OBAN01027649
[OBAN] marine metagenome; ENVO 00002150
270
197
-
Thr
CGT
[ENA]
¢þ
>WENV180359068
OBNR01002375
[OBNR] marine metagenome; Seawater_00002010_00002149
230
303
+
Thr
CGT
[ENA]
¢þ
>WENV180361699
OBNW01000040
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
16530
16605
+
Thr
CGT
[ENA]
¢þ
>WENV180365103
OBOB01010178
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
573
646
+
Thr
CGT
[ENA]
¢þ
>WENV180368085
OBOF01023095
[OBOF] marine metagenome; ENVO:00002010
211
138
-
Thr
CGT
[ENA]
¢þ
>WENV180370544
OBOH01126067
[OBOH] marine metagenome; ENVO:00002010
221
148
-
Thr
CGT
[ENA]
¢þ
>WENV180376425
OBOM01007526
[OBOM] marine metagenome; Seawater
856
929
+
Thr
CGT
[ENA]
¢þ
>WENV180381656
OBOS01007220
[OBOS] marine metagenome; ENVO 00002150
340
413
+
Thr
CGT
[ENA]
¢þ
>WENV180391675
OBPN01018866
[OBPN] marine metagenome; seawater
159
232
+
Thr
CGT
[ENA]
¢þ
>WENV180392860
OBPP01015738
[OBPP] marine metagenome; ENVO:00002042
247
320
+
Thr
CGT
[ENA]
¢þ
>WENV180394056
OBPR01049737
[OBPR] marine metagenome; ENVO:00002042
93
20
-
Thr
CGT
[ENA]
¢þ
>WENV180591436
OCOV01021791
[OCOV] marine metagenome; ENVO:01000301
358
431
+
Thr
CGT
[ENA]
¢þ
>WENV180593603
OCOX01100031
[OCOX] marine metagenome; ENVO:00002010
13
86
+
Thr
CGT
[ENA]
¢þ
>WENV181122639
OEFM01081458
[OEFM] marine metagenome; ENVO:00000569 for seawater
289
216
-
Thr
CGT
[ENA]
¢þ
>SRA1000001
SRR000281.2635
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
98
25
-
Thr
CGT
[SRA]
>SRA1000003
SRR000281.2836
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
98
25
-
Thr
CGT
[SRA]
>SRA1000016
SRR000281.37306
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
98
25
-
Thr
CGT
[SRA]
>WENV047204
AACY022646133
Marine microbial communities from Global Ocean Sampling (GOS)
415
490
+
Thr
CGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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