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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = GAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486389 (6 seq.)
>W1711232954
LYBM01000138
Gammaproteobacteria
Veronia pacifica pacificus [LYBM]
295
370
+
Phe
GAA
[ENA]
¡û
>WENV010793
AACY020292470
Marine microbial communities from Global Ocean Sampling (GOS)
5034
5111
+
Phe
GAA
[ENA]
>WENV180370855
OBOH01227380
[OBOH] marine metagenome; ENVO:00002010
301
226
-
Phe
GAA
[ENA]
¢þ
>SRA1000037
SRR000284.11236
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
23
98
+
Phe
GAA
[SRA]
>WENV069158
AACY023755103
Marine microbial communities from Global Ocean Sampling (GOS)
1049
1126
+
Phe
GAA
[ENA]
>WENV069907
AACY023788733
Marine microbial communities from Global Ocean Sampling (GOS)
498
575
+
Phe
GAA
[ENA]
Identical group No.506795 (1 seq.)
>SRA1000133
SRR000288.34176
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
112
37
-
Phe
GAA
[SRA]
Identical group No.751582 (2 seq.)
>WENV180209267
OBAK01053992
[OBAK] marine metagenome; ENVO.00002150
360
286
-
Phe
GAA
[ENA]
¢þ
>SRA1000098
SRR000287.1707
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
77
3
-
Phe
GAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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