tRNA genes clustered and arranged according to each identical group

Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)

Anticodon = TAA

HIT: 3 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.73092 (60 seq.)
>WENV180045123 MOXS02081425 [MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter 311 397 + Leu TAA [ENA] ¢þ
>WENV180062043 MPLX02261394 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 1361 1447 + Leu TAA [ENA] ¢þ
>WENV180082864 MPMC02265978 [MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter 369 283 - Leu TAA [ENA] ¢þ
>WENV180107633 OAPH01000969 [OAPH] marine metagenome; seawater 1730 1644 - Leu TAA [ENA] ¢þ
>WENV180386990 OBPD01035227 [OBPD] marine metagenome; Sea Water 268 182 - Leu TAA [ENA] ¢þ
>WENV180687219 OCZA010002013 [OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5375 5461 + Leu TAA [ENA] ¢þ
>WENV183798852 PVBE010453929 [PVBE] marine metagenome; water 7462 7548 + Leu TAA [ENA] ¢þ
>WENV183808806 PVBE011328852 [PVBE] marine metagenome; water 93 7 - Leu TAA [ENA] ¢þ
>WENV170139057 CENW01242084 [CENW] marine metagenome genome assembly TARA_032_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 687 599 - Leu TAA [ENA] ¢þ
>WENV170148149 CENZ01211692 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 65 153 + Leu TAA [ENA] ¢þ
>WENV170181397 CEOX01001904 [CEOX] marine metagenome genome assembly TARA_065_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 582 670 + Leu TAA [ENA] ¢þ
>WENV170189532 CEPC01005320 [CEPC] marine metagenome genome assembly TARA_064_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 316 228 - Leu TAA [ENA] ¢þ
>WENV170196943 CEPK01084109 [CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 70 158 + Leu TAA [ENA] ¢þ
>WENV170249946 CEQS01054997 [CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 313 401 + Leu TAA [ENA] ¢þ
>WENV170272897 CERL01028401 [CERL] marine metagenome genome assembly TARA_068_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5215 5129 - Leu TAA [ENA] ¢þ
>WENV170281746 CERS01087846 [CERS] marine metagenome genome assembly TARA_068_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 127 39 - Leu TAA [ENA] ¢þ
>WENV170291907 CESB01003128 [CESB] marine metagenome genome assembly TARA_078_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 140 52 - Leu TAA [ENA] ¢þ
>WENV170293891 CESC01016894 [CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 190 102 - Leu TAA [ENA] ¢þ
>WENV170300285 CESG01111628 [CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 204 118 - Leu TAA [ENA] ¢þ
>WENV170308606 CESL01043377 [CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 71 157 + Leu TAA [ENA] ¢þ
>WENV170378841 CETV01055487 [CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 481 569 + Leu TAA [ENA] ¢þ
>WENV170415257 CEUL01027913 [CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2 90 + Leu TAA [ENA] ¢þ
>WENV170437030 CEUU01009123 [CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 90 2 - Leu TAA [ENA] ¢þ
>WENV170442073 CEUW01007723 [CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 90 2 - Leu TAA [ENA] ¢þ
>WENV170458786 CEVC01003890 [CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5933 6021 + Leu TAA [ENA] ¢þ
>WENV170466768 CEVE01082101 [CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 401 313 - Leu TAA [ENA] ¢þ
>WENV170468099 CEVF01010306 [CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 646 734 + Leu TAA [ENA] ¢þ
>WENV170475605 CEVI01016877 [CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 327 239 - Leu TAA [ENA] ¢þ
>WENV170479162 CEVK01189967 [CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 68 156 + Leu TAA [ENA] ¢þ
>WENV170484580 CEVN01030825 [CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1545 1457 - Leu TAA [ENA] ¢þ
>WENV170505949 CEVW01119905 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2 90 + Leu TAA [ENA] ¢þ
>WENV170516980 CEWE01001152 [CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2944 3032 + Leu TAA [ENA] ¢þ
>WENV170580668 FUFK010049305 [FUFK] metagenome; unknown 38366 38278 - Leu TAA [ENA] ¢þ
>WENV170587699 FUFK010511469 [FUFK] metagenome; unknown 521 433 - Leu TAA [ENA] ¢þ
>WENV170588762 FUFK010588395 [FUFK] metagenome; unknown 1168 1080 - Leu TAA [ENA] ¢þ
>WENV170601300 FUWD010165658 [FUWD] metagenome; unknown 789 877 + Leu TAA [ENA] ¢þ
>WENV170750473 LUMG01014586 [LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m 588 500 - Leu TAA [ENA] ¢þ
>WENV170764996 LWDU01034418 [LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater 4885 4797 - Leu TAA [ENA] ¢þ
>WENV170791698 MDSV01087361 [MDSV] marine metagenome; seawater 9 97 + Leu TAA [ENA] ¢þ
>WENV170806390 MDSW01081189 [MDSW] marine metagenome; seawater 4 92 + Leu TAA [ENA] ¢þ
>WENV170823514 MDSY01059052 [MDSY] marine metagenome; seawater 15 103 + Leu TAA [ENA] ¢þ
>WENV170824108 MDSY01069819 [MDSY] marine metagenome; seawater 26 114 + Leu TAA [ENA] ¢þ
>WENV170831223 MDSZ01040548 [MDSZ] marine metagenome; seawater 4031 4117 + Leu TAA [ENA] ¢þ
>WENV170845125 MDTA01018305 [MDTA] marine metagenome; seawater 11 97 + Leu TAA [ENA] ¢þ
>WENV170857972 MDTB01016114 [MDTB] marine metagenome; seawater 25718 25630 - Leu TAA [ENA] ¢þ
>WENV170868562 MDTB01163761 [MDTB] marine metagenome; seawater 9590 9678 + Leu TAA [ENA] ¢þ
>WENV170868644 MDTB01164970 [MDTB] marine metagenome; seawater 9 97 + Leu TAA [ENA] ¢þ
>WENV170945579 MDUP01023930 [MDUP] marine metagenome; 85 m water sample from station 6 116 204 + Leu TAA [ENA] ¢þ
>SRA1000073 SRR000285.44335 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 1 89 + Leu TAA [SRA]
>SRA1006685 SRR020488.176513 Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041) 8 96 + Leu TAA [SRA]
>SRA1006945 SRR020488.274434 Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041) 8 96 + Leu TAA [SRA]
>WENV029171 AACY021177361 Marine microbial communities from Global Ocean Sampling (GOS) 446 534 + Leu TAA [ENA]
>WENV003796 AACY020105029 Marine microbial communities from Global Ocean Sampling (GOS) 528 440 - Leu TAA [ENA]
>WENV004328 AACY020120593 Marine microbial communities from Global Ocean Sampling (GOS) 109 197 + Leu TAA [ENA]
>WENV051291 AACY022946990 Marine microbial communities from Global Ocean Sampling (GOS) 615 705 + Leu TAA [ENA]
>WENV005407 AACY020150777 Marine microbial communities from Global Ocean Sampling (GOS) 2178 2088 - Leu TAA [ENA]
>WENV067694 AACY023699508 Marine microbial communities from Global Ocean Sampling (GOS) 1222 1134 - Leu TAA [ENA]
>WENV068562 AACY023731181 Marine microbial communities from Global Ocean Sampling (GOS) 167 255 + Leu TAA [ENA]
>WENV072374 AACY023881931 Marine microbial communities from Global Ocean Sampling (GOS) 733 821 + Leu TAA [ENA]
>WENV074036 AACY023953391 Marine microbial communities from Global Ocean Sampling (GOS) 2 92 + Leu TAA [ENA]
Identical group No.89875 (71 seq.)
>WENV012464 AACY020339768 Marine microbial communities from Global Ocean Sampling (GOS) 3688 3777 + Leu TAA [ENA]
>WENV180114397 OAPS01008019 [OAPS] marine metagenome; sea water 269 183 - Leu TAA [ENA] ¢þ
>WENV170151504 CEOD01002040 [CEOD] marine metagenome genome assembly TARA_036_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1404 1318 - Leu TAA [ENA] ¢þ
>WENV170155412 CEOG01027536 [CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 295 381 + Leu TAA [ENA] ¢þ
>WENV170156338 CEOI01013583 [CEOI] marine metagenome genome assembly TARA_036_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 842 756 - Leu TAA [ENA] ¢þ
>WENV170156402 CEOI01023750 [CEOI] marine metagenome genome assembly TARA_036_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1404 1318 - Leu TAA [ENA] ¢þ
>WENV170166479 CEOO01068318 [CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1434 1348 - Leu TAA [ENA] ¢þ
>WENV170192502 CEPF01007543 [CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 123 209 + Leu TAA [ENA] ¢þ
>WENV170200013 CEPM01009740 [CEPM] marine metagenome genome assembly TARA_038_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1451 1365 - Leu TAA [ENA] ¢þ
>WENV170200506 CEPN01034093 [CEPN] marine metagenome genome assembly TARA_038_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 758 672 - Leu TAA [ENA] ¢þ
>WENV170471886 CEVG01117866 [CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1054 968 - Leu TAA [ENA] ¢þ
>WENV170473277 CEVH01019914 [CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4665 4751 + Leu TAA [ENA] ¢þ
>WENV170598168 FUWD010027994 [FUWD] metagenome; unknown 89 3 - Leu TAA [ENA] ¢þ
>WENV170603672 FUWD010328907 [FUWD] metagenome; unknown 13 99 + Leu TAA [ENA] ¢þ
>WENV170603945 FUWD010347142 [FUWD] metagenome; unknown 303 216 - Leu TAA [ENA] ¢þ
>WENV170755047 LUMM01011287 [LUMM] marine metagenome; Red Sea water column Station 22 - depth 50m 777 863 + Leu TAA [ENA] ¢þ
>WENV170757569 LUMQ01003705 [LUMQ] marine metagenome; Red Sea water column Station 12 - depth 25m 129 43 - Leu TAA [ENA] ¢þ
>WENV170787509 MDSV01019462 [MDSV] marine metagenome; seawater 3187 3273 + Leu TAA [ENA] ¢þ
>WENV170832347 MDSZ01060521 [MDSZ] marine metagenome; seawater 14064 14148 + Leu TAA [ENA] ¢þ
>WENV170879981 MDTC01104096 [MDTC] marine metagenome; seawater 132 46 - Leu TAA [ENA] ¢þ
>WENV170882463 MDTC01149600 [MDTC] marine metagenome; seawater 2126 2040 - Leu TAA [ENA] ¢þ
>WENV170913382 MDTE01133799 [MDTE] marine metagenome; seawater 23888 23974 + Leu TAA [ENA] ¢þ
>PHG181000228 KJ019040 Myoviridae Synechococcus phage ACG-2014b (KJ019040) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000233 KJ019041 Myoviridae Synechococcus phage ACG-2014b (KJ019041) 18633 18719 + Leu TAA [ENA] ¡û
>PHG181000238 KJ019042 Myoviridae Synechococcus phage ACG-2014b (KJ019042) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000243 KJ019043 Myoviridae Synechococcus phage ACG-2014b (KJ019043) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000248 KJ019044 Myoviridae Synechococcus phage ACG-2014b (KJ019044) 18733 18819 + Leu TAA [ENA] ¡û
>PHG181000264 KJ019049 Myoviridae Synechococcus phage ACG-2014b (KJ019049) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000272 KJ019051 Myoviridae Synechococcus phage ACG-2014b (KJ019051) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000304 KJ019060 Myoviridae Synechococcus phage ACG-2014b (KJ019060) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000309 KJ019061 Myoviridae Synechococcus phage ACG-2014b (KJ019061) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000462 KJ019104 Myoviridae Synechococcus phage ACG-2014b (KJ019104) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000473 KJ019108 Myoviridae Synechococcus phage ACG-2014b (KJ019108) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000478 KJ019109 Myoviridae Synechococcus phage ACG-2014b (KJ019109) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000483 KJ019110 Myoviridae Synechococcus phage ACG-2014b (KJ019110) 18740 18826 + Leu TAA [ENA] ¡û
>PHG181000556 KJ019132 Myoviridae Synechococcus phage ACG-2014b (KJ019132) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000561 KJ019133 Myoviridae Synechococcus phage ACG-2014b (KJ019133) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000566 KJ019134 Myoviridae Synechococcus phage ACG-2014b (KJ019134) 18740 18826 + Leu TAA [ENA] ¡û
>PHG181000624 KJ019154 Myoviridae Synechococcus phage ACG-2014b (KJ019154) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181000654 KJ019161 Myoviridae Synechococcus phage ACG-2014b (KJ019161) 18645 18731 + Leu TAA [ENA] ¡û
>PHG181002270 KU686207 Myoviridae Synechococcus phage S-CAM22 (KU686207) 17941 18025 + Leu TAA [ENA] ¡û
>PHG181002275 KU686208 Myoviridae Synechococcus phage S-CAM22 (KU686208) 17936 18020 + Leu TAA [ENA] ¡û
>PHG181002280 KU686209 Myoviridae Synechococcus phage S-CAM22 (KU686209) 17905 17989 + Leu TAA [ENA] ¡û
>PHG181003078 KX349308 Myoviridae Cyanophage S-RIM12 (KX349308) 18296 18382 + Leu TAA [ENA] ¡û
>PHG181003083 KX349309 Myoviridae Cyanophage S-RIM12 (KX349309) 18341 18427 + Leu TAA [ENA] ¡û
>PHG181003088 KX349310 Myoviridae Cyanophage S-RIM12 (KX349310) 18102 18188 + Leu TAA [ENA] ¡û
>PHG181003093 KX349311 Myoviridae Cyanophage S-RIM12 (KX349311) 18296 18382 + Leu TAA [ENA] ¡û
>PHG181003103 KX349313 Myoviridae Cyanophage S-RIM12 (KX349313) 18296 18382 + Leu TAA [ENA] ¡û
>PHG181003108 KX349314 Myoviridae Cyanophage S-RIM12 (KX349314) 18347 18433 + Leu TAA [ENA] ¡û
>PHG181003113 KX349315 Myoviridae Cyanophage S-RIM12 (KX349315) 18353 18439 + Leu TAA [ENA] ¡û
>PHG181003118 KX349316 Myoviridae Cyanophage S-RIM12 (KX349316) 18347 18433 + Leu TAA [ENA] ¡û
>PHG181003123 KX349317 Myoviridae Cyanophage S-RIM12 (KX349317) 18353 18439 + Leu TAA [ENA] ¡û
>PHG181003128 KX349318 Myoviridae Cyanophage S-RIM12 (KX349318) 18413 18499 + Leu TAA [ENA] ¡û
>PHG181003138 KX349320 Myoviridae Cyanophage S-RIM12 (KX349320) 18347 18433 + Leu TAA [ENA] ¡û
>PHG181003143 KX349321 Myoviridae Cyanophage S-RIM12 (KX349321) 18102 18188 + Leu TAA [ENA] ¡û
>PHG181003148 KX349322 Myoviridae Cyanophage S-RIM12 (KX349322) 18209 18295 + Leu TAA [ENA] ¡û
>PHG181003153 KX349323 Myoviridae Cyanophage S-RIM12 (KX349323) 18296 18382 + Leu TAA [ENA] ¡û
>PHG181003158 KX349324 Myoviridae Cyanophage S-RIM12 (KX349324) 18299 18385 + Leu TAA [ENA] ¡û
>PHG181003168 KX349326 Myoviridae Cyanophage S-RIM12 (KX349326) 18296 18382 + Leu TAA [ENA] ¡û
>PHG181003173 KX349327 Myoviridae Cyanophage S-RIM12 (KX349327) 17927 18013 + Leu TAA [ENA] ¡û
>PHG14100290 GU071097 Myoviridae Synechococcus phage S-SSM5 8102-12 (GU071097) 19381 19468 + Leu TAA [ENA] ¡û
>PHG14100313 GU071106 Myoviridae Synechococcus phage Syn19 (GU071106) 22314 22400 + Leu TAA [ENA] ¡û
>PHG14100319 GU071108 Myoviridae Prochlorococcus phage Syn33 (GU071108) 18346 18432 + Leu TAA [ENA] ¡û
>PHG14100744 HQ634189 unclassified dsDNA phages Cyanophage Syn30 (HQ634189) 37376 37290 - Leu TAA [ENA] ¡û
>PHG14100750 HQ634190 Myoviridae Cyanophage Syn2 (HQ634190) 131657 131743 + Leu TAA [ENA] ¡û
>SRA1000116 SRR000288.3383 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 30 116 + Leu TAA [SRA]
>SRA1000118 SRR000288.4395 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 30 116 + Leu TAA [SRA]
>SRA1000120 SRR000288.6600 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 30 116 + Leu TAA [SRA]
>SRA1000122 SRR000288.7208 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 30 116 + Leu TAA [SRA]
>SRA1000124 SRR000288.7672 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 30 116 + Leu TAA [SRA]
>SRA1000130 SRR000288.25086 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 30 116 + Leu TAA [SRA]
Identical group No.169138 (1 seq.)
>SRA1000012 SRR000281.11593 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 96 11 - Leu TAA [SRA]
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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