This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = TCT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285123 (33 seq.)
>WENV180112562
OAPP01039612
[OAPP] marine metagenome; Surface water
231
307
+
Arg
TCT
[ENA]
¢þ
>WENV180114166
OAPR01194086
[OAPR] marine metagenome; seawater
99
172
+
Arg
TCT
[ENA]
¢þ
>WENV180209501
OBAL01001889
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1914
1990
+
Arg
TCT
[ENA]
¢þ
>WENV180367084
OBOE01008983
[OBOE] marine metagenome; ENVO:00002010
376
300
-
Arg
TCT
[ENA]
¢þ
>WENV180367965
OBOF01013464
[OBOF] marine metagenome; ENVO:00002010
409
333
-
Arg
TCT
[ENA]
¢þ
>WENV180369156
OBOG01036120
[OBOG] marine metagenome; seawater
92
168
+
Arg
TCT
[ENA]
¢þ
>WENV180374688
OBOK01006587
[OBOK] marine metagenome; seawater
731
807
+
Arg
TCT
[ENA]
¢þ
>WENV180375445
OBOL01011078
[OBOL] marine metagenome; Surface water
387
311
-
Arg
TCT
[ENA]
¢þ
>WENV180385897
OBPB01004041
[OBPB] marine metagenome; Sterile flask
1626
1550
-
Arg
TCT
[ENA]
¢þ
>WENV180388075
OBPG01043909
[OBPG] marine metagenome; Sterile flask
427
351
-
Arg
TCT
[ENA]
¢þ
>WENV180390310
OBPK01091819
[OBPK] marine metagenome; Sterile flask
87
163
+
Arg
TCT
[ENA]
¢þ
>WENV180392317
OBPO01042084
[OBPO] marine metagenome; seawater
87
163
+
Arg
TCT
[ENA]
¢þ
>WENV180394511
OBPS01011571
[OBPS] marine metagenome; ENVO:00002010 seawater
1036
960
-
Arg
TCT
[ENA]
¢þ
>WENV180395882
OBPT01220363
[OBPT] marine metagenome; ENVO:00002010 seawater
201
125
-
Arg
TCT
[ENA]
¢þ
>WENV180587588
OCOO01014467
[OCOO] marine metagenome; seawater
318
242
-
Arg
TCT
[ENA]
¢þ
>WENV180594901
OCPA01039416
[OCPA] marine metagenome; ENVO:00002010
298
374
+
Arg
TCT
[ENA]
¢þ
>WENV180595150
OCPB01029631
[OCPB] marine metagenome; ENVO:00002149
281
205
-
Arg
TCT
[ENA]
¢þ
>WENV180637101
OCRG01000161
[OCRG] marine metagenome; seawater
7765
7689
-
Arg
TCT
[ENA]
¢þ
>WENV180638459
OCRI01000206
[OCRI] marine metagenome; Sterile flask
15154
15230
+
Arg
TCT
[ENA]
¢þ
>WENV180650271
OCSY01002265
[OCSY] marine metagenome; 30 L Plastic container
333
409
+
Arg
TCT
[ENA]
¢þ
>WENV181126025
OEFV01002475
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
1501
1577
+
Arg
TCT
[ENA]
¢þ
>WENV170532012
CEWO01014159
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
198
274
+
Arg
TCT
[ENA]
¢þ
>WENV170620950
FUWD013044293
[FUWD] metagenome; unknown
1825
1749
-
Arg
TCT
[ENA]
¢þ
>WENV170629108
FUWD013261211
[FUWD] metagenome; unknown
1825
1749
-
Arg
TCT
[ENA]
¢þ
>WENV170927062
MDTG01111102
[MDTG] marine metagenome; seawater
91
167
+
Arg
TCT
[ENA]
¢þ
>WENV170936753
MDTG01280022
[MDTG] marine metagenome; seawater
1045
1121
+
Arg
TCT
[ENA]
¢þ
>C191080022
CP031769
Gammaproteobacteria
Salinimonas sediminis N102 [CP031769]
2999776
2999700
-
Arg
TCT
-
¡û
>W1911584820
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
56581
56657
+
Arg
TCT
[ENA]
¡û
>SRA1000036
SRR000284.5149
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
11
87
+
Arg
TCT
[SRA]
>W1911748750
QWEZ01000001
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
1605498
1605422
-
Arg
TCT
[ENA]
¡û
>W1810426133
PYVY01000002
Gammaproteobacteria
Alteromonas indica IO390401 [PYVY]
223456
223532
+
Arg
TCT
[ENA]
¡û
>WENV000481
AACY020014154
Marine microbial communities from Global Ocean Sampling (GOS)
177
99
-
Arg
TCT
[ENA]
>WENV055997
AACY023245907
Marine microbial communities from Global Ocean Sampling (GOS)
234
156
-
Arg
TCT
[ENA]
Identical group No.285125 (5 seq.)
>WENV180375452
OBOL01012048
[OBOL] marine metagenome; Surface water
340
264
-
Arg
TCT
[ENA]
¢þ
>WENV180376620
OBOM01041374
[OBOM] marine metagenome; Seawater
187
111
-
Arg
TCT
[ENA]
¢þ
>WENV170132595
CENT01087454
[CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3102
3026
-
Arg
TCT
[ENA]
¢þ
>WENV170386697
CETY01191476
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1564
1488
-
Arg
TCT
[ENA]
¢þ
>SRA1000035
SRR000284.4374
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
14
90
+
Arg
TCT
[SRA]
Identical group No.337547 (4 seq.)
>WENV180363199
OBNY01006427
[OBNY] marine metagenome; ENVO:00002010
383
459
+
Arg
TCT
[ENA]
¢þ
>WENV180590761
OCOU01008675
[OCOU] marine metagenome; Water
343
267
-
Arg
TCT
[ENA]
¢þ
>WENV180637283
OCRG01005958
[OCRG] marine metagenome; seawater
322
246
-
Arg
TCT
[ENA]
¢þ
>SRA1000038
SRR000284.13783
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
25
101
+
Arg
TCT
[SRA]
Identical group No.337549 (6 seq.)
>WENV180369929
OBOH01011250
[OBOH] marine metagenome; ENVO:00002010
623
547
-
Arg
TCT
[ENA]
¢þ
>WENV180392654
OBPP01001205
[OBPP] marine metagenome; ENVO:00002042
1291
1215
-
Arg
TCT
[ENA]
¢þ
>WENV180591295
OCOV01008802
[OCOV] marine metagenome; ENVO:01000301
190
266
+
Arg
TCT
[ENA]
¢þ
>W141169866
AXWS01000007
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
567351
567275
-
Arg
TCT
[ENA]
¡û
>WENV001820
AACY020051800
Marine microbial communities from Global Ocean Sampling (GOS)
1744
1822
+
Arg
TCT
[ENA]
>SRA1000052
SRR000284.40651
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
42
118
+
Arg
TCT
[SRA]
Identical group No.415299 (1 seq.)
>SRA1000105
SRR000287.36944
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
18
94
+
Arg
TCT
[SRA]
Identical group No.573342 (1 seq.)
>SRA1000004
SRR000281.2895
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
36
110
+
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK