This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = TTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.562805 (1 seq.)
>SRA1000029
SRR000283.8798
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
23
98
+
Gln
TTG
[SRA]
Identical group No.662435 (84 seq.)
>WENV180101085
OAOU01000301
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
3031
3105
+
Gln
TTG
[ENA]
¢þ
>WENV180103130
OAPA01002748
[OAPA] marine metagenome; ENVO:00002010
817
891
+
Gln
TTG
[ENA]
¢þ
>WENV180110010
OAPL01034679
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
200
128
-
Gln
TTG
[ENA]
¢þ
>WENV180114642
OAPS01027787
[OAPS] marine metagenome; sea water
290
364
+
Gln
TTG
[ENA]
¢þ
>WENV180209076
OBAK01013090
[OBAK] marine metagenome; ENVO.00002150
385
457
+
Gln
TTG
[ENA]
¢þ
>WENV180210166
OBAL01133610
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
194
268
+
Gln
TTG
[ENA]
¢þ
>WENV180359599
OBNS01004367
[OBNS] marine metagenome; Seawater
332
258
-
Gln
TTG
[ENA]
¢þ
>WENV180361042
OBNU01093740
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
193
119
-
Gln
TTG
[ENA]
¢þ
>WENV180361849
OBNW01004639
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
481
555
+
Gln
TTG
[ENA]
¢þ
>WENV180365046
OBOB01004556
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
680
606
-
Gln
TTG
[ENA]
¢þ
>WENV180376747
OBOM01070432
[OBOM] marine metagenome; Seawater
369
443
+
Gln
TTG
[ENA]
¢þ
>WENV180391678
OBPN01019266
[OBPN] marine metagenome; seawater
552
624
+
Gln
TTG
[ENA]
¢þ
>WENV180392914
OBPP01025307
[OBPP] marine metagenome; ENVO:00002042
382
310
-
Gln
TTG
[ENA]
¢þ
>WENV180393915
OBPR01023232
[OBPR] marine metagenome; ENVO:00002042
274
200
-
Gln
TTG
[ENA]
¢þ
>WENV180394402
OBPS01003838
[OBPS] marine metagenome; ENVO:00002010 seawater
1660
1586
-
Gln
TTG
[ENA]
¢þ
>WENV180650528
OCSY01056061
[OCSY] marine metagenome; 30 L Plastic container
263
337
+
Gln
TTG
[ENA]
¢þ
>WENV181315609
OFJP01010227
[OFJP] marine metagenome; seawater
476
404
-
Gln
TTG
[ENA]
¢þ
>WENV182540407
OJAJ01000311
[OJAJ] seawater metagenome; Sea water
2578
2650
+
Gln
TTG
[ENA]
¢þ
>WENV182540828
OJAQ01000017
[OJAQ] seawater metagenome; Sea water
15389
15317
-
Gln
TTG
[ENA]
¢þ
>WENV182542998
OJAZ01013810
[OJAZ] seawater metagenome; Sea water
319
391
+
Gln
TTG
[ENA]
¢þ
>WENV182544230
OJBF01000005
[OJBF] seawater metagenome; Sea water
7332
7260
-
Gln
TTG
[ENA]
¢þ
>WENV182544468
OJBG01003968
[OJBG] seawater metagenome; Sea water
357
429
+
Gln
TTG
[ENA]
¢þ
>WENV182544933
OJBL01000260
[OJBL] seawater metagenome; Sea water
2577
2505
-
Gln
TTG
[ENA]
¢þ
>WENV182548581
OJBW01004310
[OJBW] seawater metagenome; Sea water
370
442
+
Gln
TTG
[ENA]
¢þ
>WENV182550142
OJBZ01005299
[OJBZ] seawater metagenome; Sea water
403
475
+
Gln
TTG
[ENA]
¢þ
>WENV182552655
OJCN01001067
[OJCN] seawater metagenome; Sea water
903
831
-
Gln
TTG
[ENA]
¢þ
>WENV182553211
OJCR01000551
[OJCR] seawater metagenome; Sea water
10663
10735
+
Gln
TTG
[ENA]
¢þ
>WENV182554056
OJCT01000145
[OJCT] seawater metagenome; Sea water
2140
2212
+
Gln
TTG
[ENA]
¢þ
>WENV182557017
OJDI01000324
[OJDI] seawater metagenome; Sea water
1351
1423
+
Gln
TTG
[ENA]
¢þ
>WENV182561579
OJDX01000008
[OJDX] seawater metagenome; Sea water
30944
30872
-
Gln
TTG
[ENA]
¢þ
>WENV182561890
OJDY01000001
[OJDY] seawater metagenome; Sea water
387522
387450
-
Gln
TTG
[ENA]
¢þ
>WENV182562668
OJEA01000027
[OJEA] seawater metagenome; Sea water
11795
11723
-
Gln
TTG
[ENA]
¢þ
>WENV182563021
OJEB01000002
[OJEB] seawater metagenome; Sea water
19125
19197
+
Gln
TTG
[ENA]
¢þ
>WENV182564027
OJEE01000005
[OJEE] seawater metagenome; Sea water
22267
22339
+
Gln
TTG
[ENA]
¢þ
>WENV182568975
OJEY01000001
[OJEY] seawater metagenome; Sea water
37551
37623
+
Gln
TTG
[ENA]
¢þ
>WENV182569798
OJFB01000599
[OJFB] seawater metagenome; Sea water
212
140
-
Gln
TTG
[ENA]
¢þ
>WENV182571065
OJFG01000217
[OJFG] seawater metagenome; Sea water
15043
15115
+
Gln
TTG
[ENA]
¢þ
>WENV182572544
OJFL01020411
[OJFL] seawater metagenome; Sea water
703
631
-
Gln
TTG
[ENA]
¢þ
>WENV182574524
OJFS01000005
[OJFS] seawater metagenome; Sea water
22649
22721
+
Gln
TTG
[ENA]
¢þ
>WENV182576674
OJFY01001279
[OJFY] seawater metagenome; Sea water
2583
2511
-
Gln
TTG
[ENA]
¢þ
>WENV182577913
OJGM01000008
[OJGM] seawater metagenome; Sea water
125
53
-
Gln
TTG
[ENA]
¢þ
>WENV182580911
OJGW01027174
[OJGW] seawater metagenome; Sea water
194
122
-
Gln
TTG
[ENA]
¢þ
>WENV182582097
OJHA01000013
[OJHA] seawater metagenome; Sea water
29151
29223
+
Gln
TTG
[ENA]
¢þ
>WENV182582370
OJHB01000002
[OJHB] seawater metagenome; Sea water
6996
7068
+
Gln
TTG
[ENA]
¢þ
>WENV182583072
OJHD01000070
[OJHD] seawater metagenome; Sea water
7418
7346
-
Gln
TTG
[ENA]
¢þ
>WENV182584812
OJHG01013095
[OJHG] seawater metagenome; Sea water
601
673
+
Gln
TTG
[ENA]
¢þ
>WENV182586830
OJHK01006660
[OJHK] seawater metagenome; Sea water
2174
2246
+
Gln
TTG
[ENA]
¢þ
>WENV182587545
OJHN01000021
[OJHN] seawater metagenome; Sea water
8916
8844
-
Gln
TTG
[ENA]
¢þ
>WENV182592311
OJIR01000004
[OJIR] seawater metagenome; Sea water
51393
51321
-
Gln
TTG
[ENA]
¢þ
>WENV183053701
OLGP01003903
[OLGP] seawater metagenome; Sea water
359
431
+
Gln
TTG
[ENA]
¢þ
>WENV183054501
OLGU01000004
[OLGU] seawater metagenome; Sea water
21739
21811
+
Gln
TTG
[ENA]
¢þ
>WENV183059227
OLHU01000023
[OLHU] seawater metagenome; Sea water
36357
36429
+
Gln
TTG
[ENA]
¢þ
>WENV183060156
OLHX01000001
[OLHX] seawater metagenome; Sea water
37965
37893
-
Gln
TTG
[ENA]
¢þ
>WENV170135752
CENU01325393
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
79
153
+
Gln
TTG
[ENA]
¢þ
>WENV170570767
FLOH01000022
[FLOH] marine metagenome; water
59854
59928
+
Gln
TTG
[ENA]
¢þ
>WENV170571397
FLOH01000149
[FLOH] marine metagenome; water
13305
13377
+
Gln
TTG
[ENA]
¢þ
>WENV170626754
FUWD013229281
[FUWD] metagenome; unknown
17761
17835
+
Gln
TTG
[ENA]
¢þ
>WENV170627180
FUWD013231816
[FUWD] metagenome; unknown
12622
12696
+
Gln
TTG
[ENA]
¢þ
>WENV170627240
FUWD013232376
[FUWD] metagenome; unknown
21693
21621
-
Gln
TTG
[ENA]
¢þ
>WENV170631789
FUWD013365724
[FUWD] metagenome; unknown
54635
54709
+
Gln
TTG
[ENA]
¢þ
>WENV170632220
FUWD013379536
[FUWD] metagenome; unknown
12622
12696
+
Gln
TTG
[ENA]
¢þ
>WENV170950424
MEHZ011496092
[MEHZ] marine metagenome; marine surface water
3804
3876
+
Gln
TTG
[ENA]
¢þ
>C181143720
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
465312
465386
+
Gln
TTG
-
¡û
>W141750776
JNSD01000006
Actinomycetota
actinobacterium acMicro-4 [JNSD]
10896
10822
-
Gln
TTG
[ENA]
¡û
>SRA1000111
SRR000287.44513
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
10
84
+
Gln
TTG
[SRA]
>SRA1000112
SRR000287.50045
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
10
84
+
Gln
TTG
[SRA]
>WENV027642
AACY021060647
Marine microbial communities from Global Ocean Sampling (GOS)
169
245
+
Gln
TTG
[ENA]
>SRA1017135
SRR035082.86845
454 Sequencing (SRP001803)
408
336
-
Gln
TTG
[SRA]
>SRA1023532
SRR035084.117648
454 Sequencing (SRP001805)
330
256
-
Gln
TTG
[SRA]
>SRA1024970
SRR035084.450649
454 Sequencing (SRP001805)
278
206
-
Gln
TTG
[SRA]
>SRA1027233
SRR035086.87323
454 Sequencing (SRP001807)
379
453
+
Gln
TTG
[SRA]
>SRA1029798
SRR035087.182740
454 Sequencing (SRP001808)
129
203
+
Gln
TTG
[SRA]
>SRA1045082
SRR035092.407165
454 Sequencing (SRP001813)
205
279
+
Gln
TTG
[SRA]
>SRA1051668
SRR035098.55288
454 Sequencing (SRP001819)
32
106
+
Gln
TTG
[SRA]
>SRA1052192
SRR035098.158298
454 Sequencing (SRP001819)
157
231
+
Gln
TTG
[SRA]
>SRA1052665
SRR035098.248540
454 Sequencing (SRP001819)
182
108
-
Gln
TTG
[SRA]
>SRA1052743
SRR035098.265212
454 Sequencing (SRP001819)
151
225
+
Gln
TTG
[SRA]
>SRA1053063
SRR035098.328562
454 Sequencing (SRP001819)
128
54
-
Gln
TTG
[SRA]
>SRA1053443
SRR035098.406336
454 Sequencing (SRP001819)
300
228
-
Gln
TTG
[SRA]
>WENV047295
AACY022654579
Marine microbial communities from Global Ocean Sampling (GOS)
540
464
-
Gln
TTG
[ENA]
>W1610597645
LFFC01000012
Actinomycetota
Actinobacteria bacterium casp-actino3 [LFFC]
1558
1632
+
Gln
TTG
[ENA]
¡û
>W1610625660
LIAY01000001
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
10789
10863
+
Gln
TTG
[ENA]
¡û
>W1710718892
LFFC01000012
Actinomycetota
Actinobacteria bacterium casp-actino3 [LFFC]
1558
1632
+
Gln
TTG
[ENA]
¡û
>W1710756787
LIAY01000001
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
10789
10863
+
Gln
TTG
[ENA]
¡û
Identical group No.751584 (1 seq.)
>SRA1000104
SRR000287.36089
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
11
85
+
Gln
TTG
[SRA]
Identical group No.799255 (1 seq.)
>SRA1000087
SRR000286.23080
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
90
17
-
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK