tRNA genes clustered and arranged according to each identical group

Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)

Anticodon = TAC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.455351 (137 seq.)
>W1710925659 LODL01000002 Betaproteobacteria Dechloromonas denitrificans [LODL] 76284 76359 + Val TAC [ENA]
>W1711224646 LXUF01000001 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 1215614 1215689 + Val TAC [ENA]
>W1711339972 MCAW01000001 Betaproteobacteria Methylophilales bacterium LSUCC0135 [MCAW] 244019 244094 + Val TAC [ENA]
>W1711385776 MEEO01000324 Betaproteobacteria Nitrosomonadales bacterium SCN 54-20 [MEEO] 5786 5711 - Val TAC [ENA]
>W1711421780 MHZV01000001 Betaproteobacteria Rhodocyclales bacterium GWA2_65_19 [MHZV] 47205 47280 + Val TAC [ENA]
>W1711505607 MKVR01000050 Betaproteobacteria Nitrosospira sp. 56-18 [MKVR] 16849 16774 - Val TAC [ENA]
>W1711718058 MTHD01000002 Betaproteobacteria Azonexus hydrophilus [MTHD] 792374 792449 + Val TAC [ENA]
>W131050741 AMXB01000001 Betaproteobacteria Thauera sp. 27 [AMXB] 232947 233022 + Val TAC [ENA]
>W131050813 AMXC01000005 Betaproteobacteria Thauera sp. 63 [AMXC] 80740 80665 - Val TAC [ENA]
>W131050947 AMXE01000100 Betaproteobacteria Thauera linaloolentis 47Lol = DSM 12138 [AMXE] 2595 2520 - Val TAC [ENA]
>W131164442 ARAT01000141 Betaproteobacteria Gallionella sp. SCGC AAA018-N21 [ARAT] 28369 28294 - Val TAC [ENA]
>W131176256 ARJX01000027 Betaproteobacteria Aromatoleum toluclasticum ATCC 700605 [ARJX] 23003 22928 - Val TAC [ENA]
>W131223594 AUCE01000016 Betaproteobacteria Azonexus hydrophilus DSM 23864 [AUCE] 131506 131431 - Val TAC [ENA]
>W131223767 AUCH01000013 Betaproteobacteria Azovibrio restrictus DSM 23866 [AUCH] 121975 121900 - Val TAC [ENA]
>W131249844 CAUA01000078 Betaproteobacteria Nitrosospira lacus APG3 [CAUA] 68527 68602 + Val TAC [ENA]
>C001317 AM406670 Betaproteobacteria Azoarcus olearius BH72 [AM406670] 2269493 2269418 - Val TAC [Ensembl]
>C013383 CP000284 Betaproteobacteria Methylobacillus flagellatus KT [CP000284] 1520423 1520498 + Val TAC [Ensembl]
>C015163 CP000103 Betaproteobacteria Nitrosospira multiformis ATCC 25196 [CP000103] 2662742 2662667 - Val TAC [Ensembl]
>WENV016702 AACY020468593 Marine microbial communities from Global Ocean Sampling (GOS) 1966 2043 + Val TAC [ENA]
>WENV180101292 OAOU01019262 [OAOU] marine metagenome; ENVO:00002010 SEAWATER 478 553 + Val TAC [ENA]
>WENV180252329 OBEQ010440974 [OBEQ] groundwater metagenome; groundwater 456 381 - Val TAC [ENA]
>WENV180295981 OBIZ01510528 [OBIZ] soil metagenome; soil 127 52 - Val TAC [ENA]
>WENV180299431 OBJC01007578 [OBJC] metagenome; water 393 318 - Val TAC [ENA]
>WENV180320853 OBKQ01036212 [OBKQ] soil metagenome; Clay 295 220 - Val TAC [ENA]
>WENV180392766 OBPP01008732 [OBPP] marine metagenome; ENVO:00002042 264 339 + Val TAC [ENA]
>WENV180393698 OBPR01001640 [OBPR] marine metagenome; ENVO:00002042 304 229 - Val TAC [ENA]
>WENV180581184 OCMH01051414 [OCMH] metagenome; diffuse fluid 75 150 + Val TAC [ENA]
>WENV180584050 OCNO01007498 [OCNO] soil metagenome; Clay 121 196 + Val TAC [ENA]
>WENV180591477 OCOV01026693 [OCOV] marine metagenome; ENVO:01000301 136 61 - Val TAC [ENA]
>WENV181120806 OEFK01065302 [OEFK] marine metagenome; ENVO:00002010 seawater 341 416 + Val TAC [ENA]
>WENV181293322 OFHG01001386 [OFHG] soil metagenome; Clay 3450 3375 - Val TAC [ENA]
>WENV181294183 OFHG01095599 [OFHG] soil metagenome; Clay 440 515 + Val TAC [ENA]
>WENV181311095 OFJB01000015 [OFJB] sludge metagenome; sludge 134379 134454 + Val TAC [ENA]
>WENV181367336 OFQA01000272 [OFQA] freshwater metagenome; Freshwater Lake 560 485 - Val TAC [ENA]
>WENV181368500 OFQL01011913 [OFQL] freshwater metagenome; Freshwater Lake 453 528 + Val TAC [ENA]
>WENV181369041 OFQN01013163 [OFQN] freshwater metagenome; Freshwater Lake 135 60 - Val TAC [ENA]
>WENV181377121 OFRA01002719 [OFRA] wastewater metagenome; Lake Maggiore Verbania 3306 3231 - Val TAC [ENA]
>WENV181378645 OFRB01042761 [OFRB] wastewater metagenome; Exp Tend CN 0WW 435 510 + Val TAC [ENA]
>WENV181379685 OFRD01005983 [OFRD] wastewater metagenome; Exp Tend CN 100WW 2416 2491 + Val TAC [ENA]
>WENV181386459 OFRL01004466 [OFRL] wastewater metagenome; Lake Maggiore Cannobio 504 429 - Val TAC [ENA]
>WENV181400188 OFSF01002131 [OFSF] wastewater metagenome; Exp Tend VB 100WW 171 96 - Val TAC [ENA]
>WENV181414345 OGCL01000257 [OGCL] hot springs metagenome; Hot spring water 56691 56616 - Val TAC [ENA]
>WENV181415674 OGCL01018566 [OGCL] hot springs metagenome; Hot spring water 328 403 + Val TAC [ENA]
>W141229521 BAMT01000001 Betaproteobacteria Methylobacillus glycogenes JCM 2850 [BAMT] 373971 374046 + Val TAC [ENA]
>W141229523 BAMT01000001 Betaproteobacteria Methylobacillus glycogenes JCM 2850 [BAMT] 526815 526890 + Val TAC [ENA]
>W141277632 JAET01000001 Betaproteobacteria Dechloromonas agitata is5 [JAET] 2376220 2376145 - Val TAC [ENA]
>WENV183661408 ORJL010106668 [ORJL] groundwater metagenome; groundwater 1962 1887 - Val TAC [ENA]
>WENV183665309 ORJL010456259 [ORJL] groundwater metagenome; groundwater 2150 2225 + Val TAC [ENA]
>WENV183680716 ORMF010214809 [ORMF] groundwater metagenome; groundwater 7690 7615 - Val TAC [ENA]
>WENV183684301 ORMF010691994 [ORMF] groundwater metagenome; groundwater 15814 15739 - Val TAC [ENA]
>WENV183726820 PJTO01000206 [PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment 43501 43576 + Val TAC [ENA]
>WENV183726859 PJTO01000294 [PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment 11275 11350 + Val TAC [ENA]
>WENV183729207 PJTQ01011310 [PJTQ] soil metagenome; Soil (3) enriched on wood chips 666 591 - Val TAC [ENA]
>WENV183729315 PJTQ01021284 [PJTQ] soil metagenome; Soil (3) enriched on wood chips 1 76 + Val TAC [ENA]
>WENV183736703 PJUD01000003 [PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment 328424 328499 + Val TAC [ENA]
>WENV183736705 PJUD01000003 [PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment 500298 500373 + Val TAC [ENA]
>WENV183740622 PJUF01004581 [PJUF] feces metagenome; Chicken feces (3) enriched on wood chips 2988 2913 - Val TAC [ENA]
>WENV183740835 PJUF01012684 [PJUF] feces metagenome; Chicken feces (3) enriched on wood chips 1536 1611 + Val TAC [ENA]
>WENV170000161 AERA01018516 [AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant 458 533 + Val TAC [ENA]
>WENV170009964 APMI01005971 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 29790 29865 + Val TAC [ENA]
>WENV170561123 CZCA01003091 [CZCA] anaerobic digester metagenome; anaerobic digester 628 703 + Val TAC [ENA]
>WENV170570858 FLOH01000030 [FLOH] marine metagenome; water 32653 32728 + Val TAC [ENA]
>WENV170571800 FLOH01000307 [FLOH] marine metagenome; water 9321 9396 + Val TAC [ENA]
>WENV170572077 FLOH01000513 [FLOH] marine metagenome; water 77576 77501 - Val TAC [ENA]
>WENV170601250 FUWD010163754 [FUWD] metagenome; unknown 325 400 + Val TAC [ENA]
>WENV170606513 FUWD010677028 [FUWD] metagenome; unknown 386 311 - Val TAC [ENA]
>WENV170650191 JRYD01020206 [JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO 497 422 - Val TAC [ENA]
>WENV170652655 JRYH01011791 [JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and 1346 1421 + Val TAC [ENA]
>WENV170653241 JRYI01030513 [JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO 579 504 - Val TAC [ENA]
>WENV170654512 JRYL01000168 [JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different 107937 108012 + Val TAC [ENA]
>WENV170654676 JRYL01004833 [JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different 1986 2061 + Val TAC [ENA]
>WENV170654822 JRYL01028356 [JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different 1613 1538 - Val TAC [ENA]
>WENV170657999 JTFP01042353 [JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater 196 121 - Val TAC [ENA]
>WENV170712113 LNFM01009842 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 7078 7153 + Val TAC [ENA]
>WENV170961655 MLJW01000360 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 18367 18442 + Val TAC [ENA]
>WENV002105 AACY020058683 Marine microbial communities from Global Ocean Sampling (GOS) 3581 3658 + Val TAC [ENA]
>C181049336 CP021106 Betaproteobacteria Nitrosospira lacus APG3 [CP021106] 17740 17665 - Val TAC -
>C181060438 CP022187 Betaproteobacteria Parazoarcus communis TSPY31 [CP022187] 1632230 1632155 - Val TAC -
>C181060481 CP022188 Betaproteobacteria Parazoarcus communis TSNA42 [CP022188] 4449024 4448949 - Val TAC -
>C181121215 CP025682 Betaproteobacteria Pseudazoarcus pumilus SY39 [CP025682] 1859153 1859078 - Val TAC -
>C191022911 CP022958 Betaproteobacteria Azoarcus sp. DD4 [CP022958] 2880613 2880538 - Val TAC -
>W141558441 JHVX01000010 Betaproteobacteria Nitrosospira briensis C-128 [JHVX] 18089 18014 - Val TAC [ENA]
>W141561715 JHYR01000004 Betaproteobacteria Thauera linaloolentis 47Lol = DSM 12138 [JHYR] 34558 34483 - Val TAC [ENA]
>W1910228577 FNVK01000031 Betaproteobacteria Nitrosospira multiformis ATCC 25196 Nl13 [FNVK] 11344 11419 + Val TAC [ENA]
>W1910744069 MHZX01000026 Betaproteobacteria Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX] 6541 6466 - Val TAC [ENA]
>W1910828057 MWUM01000003 Betaproteobacteria Zoogloea sp. LCSB751 [MWUM] 2508 2433 - Val TAC [ENA]
>W1910942190 NJGG01000002 Betaproteobacteria Polynucleobacter cosmopolitanus MWH-MoIso2 [NJGG] 22497 22422 - Val TAC [ENA]
>C09107578 CP001674 Betaproteobacteria Methylovorus glucosotrophus SIP3-4 [CP001674] 2607163 2607088 - Val TAC [Ensembl]
>C09107585 CP001674 Betaproteobacteria Methylovorus glucosotrophus SIP3-4 [CP001674] 1566656 1566581 - Val TAC [Ensembl]
>W1911114356 NOIH01000008 Betaproteobacteria Thauera propionica KNDSS-Mac4 [NOIH] 210207 210282 + Val TAC [ENA]
>W1911496914 OCMZ01000001 Betaproteobacteria Nitrosovibrio sp. Nv4 [OCMZ] 24699 24624 - Val TAC [ENA]
>SRA1000078 SRR000286.10214 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 85 10 - Val TAC [SRA]
>W1810444913 PZKC01000006 Betaproteobacteria Pseudothauera lacus D20 [PZKC] 42467 42392 - Val TAC [ENA]
>W1810464074 QAAC01000003 Betaproteobacteria Nitrosospira sp. Nsp6 [QAAC] 315403 315478 + Val TAC [ENA]
>W1810476939 QAOK01000010 Betaproteobacteria Nitrosospira multiformis Nl12 [QAOK] 17141 17066 - Val TAC [ENA]
>W1810477261 QAOR01000003 Betaproteobacteria Nitrosospira sp. Nsp5 [QAOR] 315403 315478 + Val TAC [ENA]
>W1810477435 QAOU01000008 Betaproteobacteria Nitrosospira sp. Nsp2 [QAOU] 17197 17122 - Val TAC [ENA]
>W1810503418 QBKC01000004 Betaproteobacteria Nitrosospira sp. Nsp37 [QBKC] 340820 340895 + Val TAC [ENA]
>W1810696192 QLTB01000013 Betaproteobacteria Nitrosospira multiformis Nl15 [QLTB] 16799 16724 - Val TAC [ENA]
>W1810696240 QLTC01000021 Betaproteobacteria Nitrosospira multiformis Nsp16 [QLTC] 17920 17995 + Val TAC [ENA]
>W1810696274 QLTD01000004 Betaproteobacteria Nitrosospira multiformis Nl8 [QLTD] 16795 16720 - Val TAC [ENA]
>C151076210 CP011072 Betaproteobacteria Azoarcus sp. CIB [CP011072] 3235964 3235889 - Val TAC -
>C151094449 CP012371 Betaproteobacteria Nitrosospira briensis C-128 [CP012371] 2336480 2336555 + Val TAC -
>C151104261 LN827929 Betaproteobacteria Candidatus Methylopumilus planktonicus MMS-10A-171 [LN827929] 770884 770809 - Val TAC [Ensembl]
>W1510019305 BBWF01000010 Betaproteobacteria Sulfuricella sp. T08 [BBWF] 54280 54205 - Val TAC [ENA]
>WENV11100519 AERA01018516 [AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant 458 533 + Val TAC [ENA]
>C11114211 CP002252 Betaproteobacteria Methylovorus sp. MP688 [CP002252] 2482048 2481973 - Val TAC [Ensembl]
>C11114218 CP002252 Betaproteobacteria Methylovorus sp. MP688 [CP002252] 1566682 1566607 - Val TAC [Ensembl]
>W1511508766 JXQM01000008 Betaproteobacteria Nitrosospira sp. NpAV [JXQM] 17384 17309 - Val TAC [ENA]
>W1511686431 LFRJ01000003 Betaproteobacteria Thauera humireducens SgZ-1 [LFRJ] 109401 109326 - Val TAC [ENA]
>W11185931 CACR01001820 Betaproteobacteria Thauera selenatis AX [CACR] 3774 3849 + Val TAC [ENA]
>C161075125 CP014646 Betaproteobacteria Thauera humireducens SgZ-1 [CP014646] 1276072 1275997 - Val TAC [Ensembl]
>C161095105 CP016210 Betaproteobacteria Azoarcus olearius DQS-4 [CP016210] 2342721 2342646 - Val TAC -
>WENV059039 AACY023352087 Marine microbial communities from Global Ocean Sampling (GOS) 985 1062 + Val TAC [ENA]
>W1610071681 BCUG01000004 Betaproteobacteria Thauera butanivorans NBRC 103042 [BCUG] 116862 116787 - Val TAC [ENA]
>WENV006992 AACY020182882 Marine microbial communities from Global Ocean Sampling (GOS) 1624 1547 - Val TAC [ENA]
>W1610617622 LGUD01000042 Betaproteobacteria Rhodocyclaceae bacterium Paddy-1 [LGUD] 237367 237442 + Val TAC [ENA]
>W1610783305 LODL01000002 Betaproteobacteria Dechloromonas denitrificans [LODL] 76284 76359 + Val TAC [ENA]
>W1611008610 LXUF01000001 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 1215614 1215689 + Val TAC [ENA]
>W1710068883 BCUG01000004 Betaproteobacteria Thauera butanivorans NBRC 103042 [BCUG] 116862 116787 - Val TAC [ENA]
>W1710505965 FMUF01000007 Betaproteobacteria Nitrosospira sp. Nsp1 [FMUF] 17891 17816 - Val TAC [ENA]
>W1710507298 FMVD01000011 Betaproteobacteria Nitrosospira sp. Nsp13 [FMVD] 95950 96025 + Val TAC [ENA]
>W1710507960 FMVQ01000021 Betaproteobacteria Nitrosospira sp. Nl5 [FMVQ] 17156 17081 - Val TAC [ENA]
>W1710509166 FMWY01000026 Betaproteobacteria Nitrosospira sp. Nsp18 [FMWY] 28460 28535 + Val TAC [ENA]
>W1710527369 FNKY01000001 Betaproteobacteria Nitrosospira multiformis [FNKY] 16092 16017 - Val TAC [ENA]
>W1710532603 FNQL01000009 Betaproteobacteria Nitrosospira multiformis [FNQL] 110818 110893 + Val TAC [ENA]
>W1710545199 FOBH01000006 Betaproteobacteria Nitrosovibrio tenuis [FOBH] 148425 148500 + Val TAC [ENA]
>W1710547236 FOCT01000008 Betaproteobacteria Nitrosospira multiformis [FOCT] 16803 16728 - Val TAC [ENA]
>W1710548605 FODX01000009 Betaproteobacteria Nitrosovibrio sp. Nv6 [FODX] 52312 52387 + Val TAC [ENA]
>W1710553116 FOHI01000003 Betaproteobacteria Nitrosospira multiformis [FOHI] 404340 404415 + Val TAC [ENA]
>W1710563647 FOPV01000018 Betaproteobacteria Nitrosospira sp. Nsp14 [FOPV] 71069 71144 + Val TAC [ENA]
>W1710570799 FOVJ01000010 Betaproteobacteria Nitrosospira briensis [FOVJ] 45620 45695 + Val TAC [ENA]
>W1710571494 FOVY01000015 Betaproteobacteria Nitrosospira briensis [FOVY] 17813 17738 - Val TAC [ENA]
>W1710578980 FPBZ01000016 Betaproteobacteria Nitrosospira multiformis [FPBZ] 16811 16736 - Val TAC [ENA]
>W1710591609 FRBV01000010 Betaproteobacteria Nitrosospira sp. Nsp11 [FRBV] 18026 17951 - Val TAC [ENA]
>W1710595731 FTMD01000003 Betaproteobacteria Aromatoleum tolulyticum tolulyticus [FTMD] 25231 25156 - Val TAC [ENA]
>W1710743172 LGUD01000042 Betaproteobacteria Rhodocyclaceae bacterium Paddy-1 [LGUD] 237367 237442 + Val TAC [ENA]
Identical group No.483716 (16 seq.)
>W1711438294 MIQH01000777 Gammaproteobacteria Bathymodiolus thermophilus thioautotrophic gill symbiont [MIQH] 174 99 - Val TAC [ENA]
>W1711438296 MIQH01000928 Gammaproteobacteria Bathymodiolus thermophilus thioautotrophic gill symbiont [MIQH] 6791 6866 + Val TAC [ENA]
>C007255 AP009247 Gammaproteobacteria Candidatus Vesicomyosocius okutanii HA [AP009247] 628914 628839 - Val TAC [Ensembl]
>WENV180399820 OBQO01046744 [OBQO] marine metagenome; ENVO:00002010 283 358 + Val TAC [ENA]
>WENV180590886 OCOU01027657 [OCOU] marine metagenome; Water 285 210 - Val TAC [ENA]
>WENV170575923 FPHU01000053 [FPHU] hydrothermal vent metagenome genome assembly, contig: NODE_233.; water 16366 16291 - Val TAC [ENA]
>WENV170575932 FPHU01000125 [FPHU] hydrothermal vent metagenome genome assembly, contig: NODE_233.; water 180 105 - Val TAC [ENA]
>WENV170576037 FPHY01000059 [FPHY] hydrothermal vent metagenome genome assembly, contig: NODE_87.; water 6609 6684 + Val TAC [ENA]
>WENV170576050 FPHZ01000037 [FPHZ] hydrothermal vent metagenome genome assembly, contig: NODE_182.; water 8256 8181 - Val TAC [ENA]
>WENV170576065 FPIA01000026 [FPIA] hydrothermal vent metagenome genome assembly, contig: NODE_20.; water 7135 7210 + Val TAC [ENA]
>WENV170615708 FUWD012865785 [FUWD] metagenome; unknown 724 649 - Val TAC [ENA]
>C191027367 CP024634 Gammaproteobacteria Bathymodiolus thermophilus thioautotrophic gill symbiont EPR9N [CP024634] 992004 992079 + Val TAC -
>SRA1000067 SRR000285.29990 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 78 3 - Val TAC [SRA]
>SRA1000075 SRR000285.47217 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 78 3 - Val TAC [SRA]
>W1510081316 CDSC01000044 Gammaproteobacteria Bathymodiolus azoricus thioautotrophic gill symbiont thioautotrophic gill symbiont BazSymA [CDSC] 3353 3428 + Val TAC [ENA]
>C161000122 AP013042 Gammaproteobacteria endosymbiont of Bathymodiolus septemdierum str. Myojin knoll Myojin Knoll [AP013042] 482908 482983 + Val TAC [Ensembl]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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