tRNA genes clustered and arranged according to each identical group

Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)

Anticodon = TCT

HIT: 6 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.285123 (33 seq.)
>WENV180112562 OAPP01039612 [OAPP] marine metagenome; Surface water 231 307 + Arg TCT [ENA]
>WENV180114166 OAPR01194086 [OAPR] marine metagenome; seawater 99 172 + Arg TCT [ENA]
>WENV180209501 OBAL01001889 [OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER 1914 1990 + Arg TCT [ENA]
>WENV180367084 OBOE01008983 [OBOE] marine metagenome; ENVO:00002010 376 300 - Arg TCT [ENA]
>WENV180367965 OBOF01013464 [OBOF] marine metagenome; ENVO:00002010 409 333 - Arg TCT [ENA]
>WENV180369156 OBOG01036120 [OBOG] marine metagenome; seawater 92 168 + Arg TCT [ENA]
>WENV180374688 OBOK01006587 [OBOK] marine metagenome; seawater 731 807 + Arg TCT [ENA]
>WENV180375445 OBOL01011078 [OBOL] marine metagenome; Surface water 387 311 - Arg TCT [ENA]
>WENV180385897 OBPB01004041 [OBPB] marine metagenome; Sterile flask 1626 1550 - Arg TCT [ENA]
>WENV180388075 OBPG01043909 [OBPG] marine metagenome; Sterile flask 427 351 - Arg TCT [ENA]
>WENV180390310 OBPK01091819 [OBPK] marine metagenome; Sterile flask 87 163 + Arg TCT [ENA]
>WENV180392317 OBPO01042084 [OBPO] marine metagenome; seawater 87 163 + Arg TCT [ENA]
>WENV180394511 OBPS01011571 [OBPS] marine metagenome; ENVO:00002010 seawater 1036 960 - Arg TCT [ENA]
>WENV180395882 OBPT01220363 [OBPT] marine metagenome; ENVO:00002010 seawater 201 125 - Arg TCT [ENA]
>WENV180587588 OCOO01014467 [OCOO] marine metagenome; seawater 318 242 - Arg TCT [ENA]
>WENV180594901 OCPA01039416 [OCPA] marine metagenome; ENVO:00002010 298 374 + Arg TCT [ENA]
>WENV180595150 OCPB01029631 [OCPB] marine metagenome; ENVO:00002149 281 205 - Arg TCT [ENA]
>WENV180637101 OCRG01000161 [OCRG] marine metagenome; seawater 7765 7689 - Arg TCT [ENA]
>WENV180638459 OCRI01000206 [OCRI] marine metagenome; Sterile flask 15154 15230 + Arg TCT [ENA]
>WENV180650271 OCSY01002265 [OCSY] marine metagenome; 30 L Plastic container 333 409 + Arg TCT [ENA]
>WENV181126025 OEFV01002475 [OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter 1501 1577 + Arg TCT [ENA]
>WENV170532012 CEWO01014159 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 198 274 + Arg TCT [ENA]
>WENV170620950 FUWD013044293 [FUWD] metagenome; unknown 1825 1749 - Arg TCT [ENA]
>WENV170629108 FUWD013261211 [FUWD] metagenome; unknown 1825 1749 - Arg TCT [ENA]
>WENV170927062 MDTG01111102 [MDTG] marine metagenome; seawater 91 167 + Arg TCT [ENA]
>WENV170936753 MDTG01280022 [MDTG] marine metagenome; seawater 1045 1121 + Arg TCT [ENA]
>C191080022 CP031769 Gammaproteobacteria Salinimonas sediminis N102 [CP031769] 2999776 2999700 - Arg TCT -
>W1911584820 PIPL01000001 Gammaproteobacteria Aliidiomarina minuta MLST1 [PIPL] 56581 56657 + Arg TCT [ENA]
>SRA1000036 SRR000284.5149 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 11 87 + Arg TCT [SRA]
>W1911748750 QWEZ01000001 Gammaproteobacteria Aestuariirhabdus litorea GTF13 [QWEZ] 1605498 1605422 - Arg TCT [ENA]
>W1810426133 PYVY01000002 Gammaproteobacteria Alteromonas indica IO390401 [PYVY] 223456 223532 + Arg TCT [ENA]
>WENV000481 AACY020014154 Marine microbial communities from Global Ocean Sampling (GOS) 177 99 - Arg TCT [ENA]
>WENV055997 AACY023245907 Marine microbial communities from Global Ocean Sampling (GOS) 234 156 - Arg TCT [ENA]
Identical group No.285125 (5 seq.)
>WENV180375452 OBOL01012048 [OBOL] marine metagenome; Surface water 340 264 - Arg TCT [ENA]
>WENV180376620 OBOM01041374 [OBOM] marine metagenome; Seawater 187 111 - Arg TCT [ENA]
>WENV170132595 CENT01087454 [CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3102 3026 - Arg TCT [ENA]
>WENV170386697 CETY01191476 [CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1564 1488 - Arg TCT [ENA]
>SRA1000035 SRR000284.4374 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 14 90 + Arg TCT [SRA]
Identical group No.337547 (4 seq.)
>WENV180363199 OBNY01006427 [OBNY] marine metagenome; ENVO:00002010 383 459 + Arg TCT [ENA]
>WENV180590761 OCOU01008675 [OCOU] marine metagenome; Water 343 267 - Arg TCT [ENA]
>WENV180637283 OCRG01005958 [OCRG] marine metagenome; seawater 322 246 - Arg TCT [ENA]
>SRA1000038 SRR000284.13783 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 25 101 + Arg TCT [SRA]
Identical group No.337549 (6 seq.)
>WENV180369929 OBOH01011250 [OBOH] marine metagenome; ENVO:00002010 623 547 - Arg TCT [ENA]
>WENV180392654 OBPP01001205 [OBPP] marine metagenome; ENVO:00002042 1291 1215 - Arg TCT [ENA]
>WENV180591295 OCOV01008802 [OCOV] marine metagenome; ENVO:01000301 190 266 + Arg TCT [ENA]
>W141169866 AXWS01000007 Betaproteobacteria Derxia gummosa DSM 723 [AXWS] 567351 567275 - Arg TCT [ENA]
>WENV001820 AACY020051800 Marine microbial communities from Global Ocean Sampling (GOS) 1744 1822 + Arg TCT [ENA]
>SRA1000052 SRR000284.40651 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 42 118 + Arg TCT [SRA]
Identical group No.415299 (1 seq.)
>SRA1000105 SRR000287.36944 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 18 94 + Arg TCT [SRA]
Identical group No.573342 (1 seq.)
>SRA1000004 SRR000281.2895 Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056) 36 110 + Arg TCT [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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