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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacteroidetes
Anticodon = CCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274332 (42 seq.)
>PL173000078
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
363214
363290
+
Arg
CCG
[ENA]
¡û
>C183001017
CP022040
Bacteroidota
Prevotella melaninogenica FDAARGOS_306 [CP022040, CP022041]
1282157
1282231
+
Arg
CCG
-
¡û
>C183001607
CP023863
Bacteroidota
Prevotella jejuni CD3:33 [CP023863, CP023864]
1367022
1367096
+
Arg
CCG
-
¡û
>C193000025
AP018049
Bacteroidota
Prevotella melaninogenica GAI 07411 [AP018049, AP018050]
1156272
1156346
+
Arg
CCG
-
¡û
>C193003516
LR134384
Bacteroidota
Segatella oris NCTC13071 [LR134384]
360413
360487
+
Arg
CCG
-
¡û
>W09300729
ACSI01000029
Bacteroidota
Prevotella melaninogenica ATCC 25845 [ACSI]
232566
232490
-
Arg
CCG
[ENA]
¡û
>W09300744
ACUZ01000054
Bacteroidota
Segatella oris F0302 [ACUZ]
7857
7933
+
Arg
CCG
[ENA]
¡û
>W09300747
ACVA01000019
Bacteroidota
Prevotella veroralis F0319 [ACVA]
14292
14216
-
Arg
CCG
[ENA]
¡û
>W143000933
AMEK01000044
Bacteroidota
Alloprevotella sp. oral taxon 473 oral taxon 473 str. F0040 [AMEK]
9760
9834
+
Arg
CCG
[ENA]
¡û
>W143002550
AWGW01000007
Bacteroidota
Segatella salivae F0493 [AWGW]
334059
334133
+
Arg
CCG
[ENA]
¡û
>W143004536
BAIP01000007
Bacteroidota
Prevotella veroralis JCM 6290 [BAIP]
59526
59602
+
Arg
CCG
[ENA]
¡û
>W143004560
BAIT01000036
Bacteroidota
Prevotella corporis JCM 8529 [BAIT]
19191
19265
+
Arg
CCG
[ENA]
¡û
>W143004615
BAJC01000014
Bacteroidota
Segatella oris JCM 12252 [BAJC]
11428
11352
-
Arg
CCG
[ENA]
¡û
>W143004725
BAJX01000020
Bacteroidota
Prevotella histicola JCM 15637 = DNF00424 [BAJX]
105
29
-
Arg
CCG
[ENA]
¡û
>W143004732
BAJZ01000004
Bacteroidota
Segatella maculosa JCM 15638 [BAJZ]
31471
31397
-
Arg
CCG
[ENA]
¡û
>W143004790
BAKO01000006
Bacteroidota
Prevotella fusca JCM 17724 [BAKO]
16868
16944
+
Arg
CCG
[ENA]
¡û
>W143004793
BAKP01000016
Bacteroidota
Prevotella scopos JCM 17725 [BAKP]
25242
25318
+
Arg
CCG
[ENA]
¡û
>W143006276
JACD01000071
Bacteroidota
Prevotella sp. ICM33 [JACD]
45700
45776
+
Arg
CCG
[ENA]
¡û
>C153001259
CP012074
Bacteroidota
Prevotella fusca JCM 17724 W1435 [CP012074, CP012075]
384997
384921
-
Arg
CCG
-
¡û
>W10300167
ACWY01000057
Bacteroidota
Prevotella melaninogenica D18 [ACWY]
9213
9137
-
Arg
CCG
[ENA]
¡û
>W10300169
ACWZ01000002
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
159801
159877
+
Arg
CCG
[ENA]
¡û
>W10300321
ADDV01000020
Bacteroidota
Segatella oris C735 [ADDV]
80648
80572
-
Arg
CCG
[ENA]
¡û
>C10300184
CP002122
Bacteroidota
Prevotella melaninogenica ATCC 25845 [CP002122, CP002123]
1232744
1232820
+
Arg
CCG
[Ensembl]
¡û
>W11300240
ACWY01000057
Bacteroidota
Prevotella melaninogenica D18 [ACWY]
9213
9137
-
Arg
CCG
[ENA]
¡û
>W11300242
ACWZ01000002
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
159801
159877
+
Arg
CCG
[ENA]
¡û
>W11300385
ADCT01000063
Bacteroidota
Prevotella sp. C561 [ADCT]
267
191
-
Arg
CCG
[ENA]
¡û
>W11300413
ADDV01000020
Bacteroidota
Segatella oris C735 [ADDV]
80648
80572
-
Arg
CCG
[ENA]
¡û
>W11301105
AEQO01000175
Bacteroidota
Segatella salivae DSM 15606 [AEQO]
36295
36221
-
Arg
CCG
[ENA]
¡û
>C163001435
CP016204
Bacteroidota
Prevotella scopos JCM 17725 W2052 [CP016204, CP016205]
1128996
1128920
-
Arg
CCG
[Ensembl]
¡û
>W123000235
AFXP01000005
Bacteroidota
Prevotella histicola F0411 [AFXP]
189456
189532
+
Arg
CCG
[ENA]
¡û
>W123000300
AGEK01000027
Bacteroidota
Segatella maculosa OT 289 [AGEK]
67960
68034
+
Arg
CCG
[ENA]
¡û
>W123001428
AJIN01000036
Bacteroidota
Prevotella sp. oral taxon 306 oral taxon 306 str. F0472 [AJIN]
60473
60549
+
Arg
CCG
[ENA]
¡û
>W1630017079
LRQG01000108
Bacteroidota
Prevotella corporis [LRQG]
24250
24324
+
Arg
CCG
[ENA]
¡û
>W1730010302
FQWA01000020
Bacteroidota
Prevotella scopos JCM 17725 [FQWA]
25338
25414
+
Arg
CCG
[ENA]
¡û
>W1730019750
LRQG01000108
Bacteroidota
Prevotella corporis [LRQG]
24250
24324
+
Arg
CCG
[ENA]
¡û
>W1730020989
LTTE01000019
Bacteroidota
Prevotella sp. HMSC077E08 [LTTE]
10073
9997
-
Arg
CCG
[ENA]
¡û
>W1730021017
LTUA01000044
Bacteroidota
Prevotella sp. HMSC069G02 [LTUA]
11328
11252
-
Arg
CCG
[ENA]
¡û
>W1730021029
LTUI01000205
Bacteroidota
Prevotella sp. HMSC077E09 [LTUI]
22707
22783
+
Arg
CCG
[ENA]
¡û
>W133003459
ARIR01000022
Bacteroidota
Prevotella veroralis DSM 19559 [ARIR]
60074
60150
+
Arg
CCG
[ENA]
¡û
>W133003467
ARIU01000052
Bacteroidota
Segatella oris DSM 18711 [ARIU]
207807
207883
+
Arg
CCG
[ENA]
¡û
>W133003617
ARNR01000063
Bacteroidota
Segatella maculosa DSM 19339 [ARNR]
275737
275811
+
Arg
CCG
[ENA]
¡û
>W133004909
AUME01000041
Bacteroidota
Prevotella corporis DSM 18810 [AUME]
19188
19262
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK