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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacteroidetes
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468415 (75 seq.)
>PL171000540
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
764886
764959
+
Thr
CGT
[ENA]
¡û
>W131165918
ARBZ01000001
Bacteroidota
Hoylesella nanceiensis DSM 19126 [ARBZ]
7272
7345
+
Thr
CGT
[ENA]
¡û
>WENV180338770
OBLI01001037
[OBLI] pig gut metagenome; faeces
22994
23067
+
Thr
CGT
[ENA]
¢þ
>WENV180339617
OBLI01006285
[OBLI] pig gut metagenome; faeces
2266
2339
+
Thr
CGT
[ENA]
¢þ
>WENV180705146
ODEJ01001030
[ODEJ] human metagenome; G_DNA_Tongue dorsum
2413
2486
+
Thr
CGT
[ENA]
¢þ
>WENV180708561
ODFJ01003010
[ODFJ] human metagenome; G_DNA_Tongue dorsum
7070
6997
-
Thr
CGT
[ENA]
¢þ
>WENV180719391
ODGJ01001186
[ODGJ] human metagenome; G_DNA_Tongue dorsum
7070
6997
-
Thr
CGT
[ENA]
¢þ
>WENV180722445
ODGM01000640
[ODGM] human metagenome; G_DNA_Palatine Tonsils
6379
6306
-
Thr
CGT
[ENA]
¢þ
>WENV180759694
ODHY01080616
[ODHY] human metagenome; G_DNA_Buccal mucosa
74
1
-
Thr
CGT
[ENA]
¢þ
>WENV180768204
ODIG01003666
[ODIG] human metagenome; G_DNA_Tongue dorsum
7065
6992
-
Thr
CGT
[ENA]
¢þ
>WENV180779346
ODIN01002856
[ODIN] human metagenome; G_DNA_Throat
4151
4224
+
Thr
CGT
[ENA]
¢þ
>WENV180782773
ODIQ01000175
[ODIQ] human metagenome; G_DNA_Tongue dorsum
6198
6271
+
Thr
CGT
[ENA]
¢þ
>WENV180789619
ODIT01000128
[ODIT] human metagenome; G_DNA_Tongue dorsum
36784
36711
-
Thr
CGT
[ENA]
¢þ
>WENV180791928
ODIW01000006
[ODIW] human metagenome; G_DNA_Tongue dorsum
6784
6857
+
Thr
CGT
[ENA]
¢þ
>WENV180805398
ODJH01000003
[ODJH] human metagenome; G_DNA_Tongue dorsum
6204
6277
+
Thr
CGT
[ENA]
¢þ
>WENV180807186
ODJI01000781
[ODJI] human metagenome; G_DNA_Tongue dorsum
18855
18782
-
Thr
CGT
[ENA]
¢þ
>WENV180820996
ODJS01000088
[ODJS] human metagenome; G_DNA_Tongue dorsum
6986
7059
+
Thr
CGT
[ENA]
¢þ
>WENV180829985
ODKB01000141
[ODKB] human metagenome; G_DNA_Tongue dorsum
6302
6375
+
Thr
CGT
[ENA]
¢þ
>WENV180852370
ODKW01000584
[ODKW] human metagenome; G_DNA_Tongue dorsum
17687
17614
-
Thr
CGT
[ENA]
¢þ
>WENV180854895
ODKX01015897
[ODKX] human metagenome; G_DNA_Tongue dorsum
114
187
+
Thr
CGT
[ENA]
¢þ
>WENV180855735
ODKZ01000001
[ODKZ] human metagenome; G_DNA_Tongue dorsum
433203
433130
-
Thr
CGT
[ENA]
¢þ
>WENV180858422
ODLC01005880
[ODLC] human metagenome; G_DNA_Tongue dorsum
80
153
+
Thr
CGT
[ENA]
¢þ
>WENV180864679
ODLH01104518
[ODLH] human metagenome; G_DNA_Tongue dorsum
86
159
+
Thr
CGT
[ENA]
¢þ
>WENV180866373
ODLJ01015474
[ODLJ] human metagenome; G_DNA_Tongue dorsum
1453
1380
-
Thr
CGT
[ENA]
¢þ
>WENV180873739
ODLP01019915
[ODLP] human metagenome; G_DNA_Tongue dorsum
921
994
+
Thr
CGT
[ENA]
¢þ
>WENV180877430
ODLV01000085
[ODLV] human metagenome; G_DNA_Tongue dorsum
37116
37043
-
Thr
CGT
[ENA]
¢þ
>WENV180882584
ODMC01000164
[ODMC] human metagenome; G_DNA_Tongue dorsum
54188
54115
-
Thr
CGT
[ENA]
¢þ
>WENV180891054
ODMO01043851
[ODMO] human metagenome; G_DNA_Tongue dorsum
199
272
+
Thr
CGT
[ENA]
¢þ
>WENV180902563
ODOK01082124
[ODOK] human metagenome; G_DNA_Tongue dorsum
168
95
-
Thr
CGT
[ENA]
¢þ
>WENV180916550
ODTD01000182
[ODTD] human metagenome; G_DNA_Tongue dorsum
1
74
+
Thr
CGT
[ENA]
¢þ
>WENV180919784
ODTH01000181
[ODTH] human metagenome; G_DNA_Tongue dorsum
37116
37043
-
Thr
CGT
[ENA]
¢þ
>WENV180948089
ODUG01000244
[ODUG] human metagenome; G_DNA_Tongue dorsum
44664
44591
-
Thr
CGT
[ENA]
¢þ
>WENV180954625
ODUJ01005035
[ODUJ] human metagenome; G_DNA_Tongue dorsum
106
179
+
Thr
CGT
[ENA]
¢þ
>WENV180959559
ODUM01001279
[ODUM] human metagenome; G_DNA_Tongue dorsum
6985
7058
+
Thr
CGT
[ENA]
¢þ
>WENV180977878
ODUZ01008404
[ODUZ] human metagenome; G_DNA_Tongue dorsum
137
210
+
Thr
CGT
[ENA]
¢þ
>WENV180979070
ODVC01000002
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
196008
195935
-
Thr
CGT
[ENA]
¢þ
>WENV180979092
ODVC01000008
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
242360
242287
-
Thr
CGT
[ENA]
¢þ
>WENV180984943
ODVJ01000177
[ODVJ] human metagenome; G_DNA_Tongue dorsum
37167
37094
-
Thr
CGT
[ENA]
¢þ
>WENV180988134
ODVL01000143
[ODVL] human metagenome; G_DNA_Tongue dorsum
44683
44610
-
Thr
CGT
[ENA]
¢þ
>WENV180990188
ODVN01000581
[ODVN] human metagenome; G_DNA_Tongue dorsum
25144
25071
-
Thr
CGT
[ENA]
¢þ
>WENV180991543
ODVO01000012
[ODVO] human metagenome; G_DNA_Buccal mucosa
51370
51297
-
Thr
CGT
[ENA]
¢þ
>WENV181011034
ODWI01003445
[ODWI] human metagenome; G_DNA_Tongue dorsum
3048
2975
-
Thr
CGT
[ENA]
¢þ
>WENV181014427
ODWN01045466
[ODWN] human metagenome; G_DNA_Tongue dorsum
284
357
+
Thr
CGT
[ENA]
¢þ
>WENV181015862
ODWR01000003
[ODWR] human metagenome; G_DNA_Tongue dorsum
267974
267901
-
Thr
CGT
[ENA]
¢þ
>WENV181021195
ODWV01003360
[ODWV] human metagenome; G_DNA_Tongue dorsum
4745
4818
+
Thr
CGT
[ENA]
¢þ
>WENV181033937
ODXN01041356
[ODXN] human metagenome; G_DNA_Tongue dorsum
565
492
-
Thr
CGT
[ENA]
¢þ
>WENV181043694
ODXV01000433
[ODXV] human metagenome; G_DNA_Tongue dorsum
25232
25159
-
Thr
CGT
[ENA]
¢þ
>WENV181051525
ODYE01000181
[ODYE] human metagenome; G_DNA_Tongue dorsum
23349
23276
-
Thr
CGT
[ENA]
¢þ
>WENV181057482
ODYL01000191
[ODYL] human metagenome; G_DNA_Tongue dorsum
39389
39316
-
Thr
CGT
[ENA]
¢þ
>WENV181059605
ODYM01003475
[ODYM] human metagenome; G_DNA_Tongue dorsum
545
472
-
Thr
CGT
[ENA]
¢þ
>WENV181068443
ODZZ01000051
[ODZZ] human metagenome; G_DNA_Tongue dorsum
5129
5202
+
Thr
CGT
[ENA]
¢þ
>WENV181074754
OEAO01025147
[OEAO] human metagenome; G_DNA_Tongue dorsum
219
146
-
Thr
CGT
[ENA]
¢þ
>WENV181085073
OEAX01001294
[OEAX] human metagenome; G_DNA_Tongue dorsum
8927
8854
-
Thr
CGT
[ENA]
¢þ
>WENV181085881
OEAY01000005
[OEAY] human metagenome; G_DNA_Tongue dorsum
359479
359406
-
Thr
CGT
[ENA]
¢þ
>WENV181095968
OEBY01034759
[OEBY] human metagenome; G_DNA_Tongue dorsum
604
677
+
Thr
CGT
[ENA]
¢þ
>WENV181096648
OECA01000083
[OECA] human metagenome; G_DNA_Tongue dorsum
6463
6536
+
Thr
CGT
[ENA]
¢þ
>WENV181101759
OECT01000217
[OECT] human metagenome; G_DNA_Tongue dorsum
44652
44579
-
Thr
CGT
[ENA]
¢þ
>WENV181103851
OECV01006198
[OECV] human metagenome; G_DNA_Throat
390
317
-
Thr
CGT
[ENA]
¢þ
>WENV181104643
OEED01000019
[OEED] human metagenome; G_DNA_Tongue dorsum
6706
6779
+
Thr
CGT
[ENA]
¢þ
>WENV181108683
OEEJ01000165
[OEEJ] human metagenome; G_DNA_Tongue dorsum
6971
7044
+
Thr
CGT
[ENA]
¢þ
>WENV181112327
OEEL01000398
[OEEL] human metagenome; G_DNA_Tongue dorsum
25318
25245
-
Thr
CGT
[ENA]
¢þ
>WENV181114321
OEEO01000452
[OEEO] human metagenome; G_DNA_Supragingival plaque
25313
25240
-
Thr
CGT
[ENA]
¢þ
>WENV181120038
OEFJ01002672
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
2940
3013
+
Thr
CGT
[ENA]
¢þ
>WENV181125639
OEFU01007297
[OEFU] human metagenome; G_DNA_Saliva
179
252
+
Thr
CGT
[ENA]
¢þ
>WENV181129944
OEFY01000086
[OEFY] human metagenome; G_DNA_Throat
37600
37527
-
Thr
CGT
[ENA]
¢þ
>WENV181139461
OEGN01010201
[OEGN] human metagenome; G_DNA_Tongue dorsum
206
133
-
Thr
CGT
[ENA]
¢þ
>WENV181141742
OEGT01017018
[OEGT] human metagenome; G_DNA_Throat
280
207
-
Thr
CGT
[ENA]
¢þ
>WENV181157053
OEIG01000222
[OEIG] human metagenome; G_DNA_Hard palate
1732
1805
+
Thr
CGT
[ENA]
¢þ
>WENV181176913
OEJR01070170
[OEJR] human metagenome; G_DNA_Saliva
111
38
-
Thr
CGT
[ENA]
¢þ
>W141226356
BAKD01000001
Bacteroidota
Hoylesella nanceiensis JCM 15639 [BAKD]
762896
762823
-
Thr
CGT
[ENA]
¡û
>WENV183258049
OLRN01000320
[OLRN] human gut metagenome; faeces
30279
30206
-
Thr
CGT
[ENA]
¢þ
>W1911154506
NPJG01000119
Bacteroidota
Prevotella sp. P5-92 [NPJG]
5569
5496
-
Thr
CGT
[ENA]
¡û
>W1911154587
NPJI01000050
Bacteroidota
Prevotella sp. P2-180 [NPJI]
25750
25677
-
Thr
CGT
[ENA]
¡û
>W10105028
ACWZ01000002
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
561473
561546
+
Thr
CGT
[ENA]
¡û
>W11107348
ACWZ01000002
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
561473
561546
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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