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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacteroidetes
Anticodon = CTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.783580 (69 seq.)
>W131165942
ARBZ01000004
Bacteroidota
Hoylesella nanceiensis DSM 19126 [ARBZ]
313390
313319
-
Gln
CTG
[ENA]
¡û
>PL171000530
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
13455
13526
+
Gln
CTG
[ENA]
¡û
>WENV180005385
FLRW01014674
[FLRW] metagenome; saliva
121
50
-
Gln
CTG
[ENA]
¢þ
>WENV180011741
FLSK01034546
[FLSK] metagenome; saliva
2818
2889
+
Gln
CTG
[ENA]
¢þ
>WENV180704929
ODEJ01000298
[ODEJ] human metagenome; G_DNA_Tongue dorsum
13284
13213
-
Gln
CTG
[ENA]
¢þ
>WENV180708757
ODFJ01006896
[ODFJ] human metagenome; G_DNA_Tongue dorsum
3678
3749
+
Gln
CTG
[ENA]
¢þ
>WENV180719650
ODGJ01003823
[ODGJ] human metagenome; G_DNA_Tongue dorsum
122
51
-
Gln
CTG
[ENA]
¢þ
>WENV180722252
ODGM01000028
[ODGM] human metagenome; G_DNA_Palatine Tonsils
66887
66816
-
Gln
CTG
[ENA]
¢þ
>WENV180767891
ODIG01001179
[ODIG] human metagenome; G_DNA_Tongue dorsum
396
325
-
Gln
CTG
[ENA]
¢þ
>WENV180773846
ODIJ01002947
[ODIJ] human metagenome; G_DNA_Tongue dorsum
5947
5876
-
Gln
CTG
[ENA]
¢þ
>WENV180775579
ODIK01001379
[ODIK] human metagenome; G_DNA_Tongue dorsum
6073
6002
-
Gln
CTG
[ENA]
¢þ
>WENV180779142
ODIN01000635
[ODIN] human metagenome; G_DNA_Throat
14874
14945
+
Gln
CTG
[ENA]
¢þ
>WENV180779747
ODIN01014614
[ODIN] human metagenome; G_DNA_Throat
131
60
-
Gln
CTG
[ENA]
¢þ
>WENV180782615
ODIQ01000075
[ODIQ] human metagenome; G_DNA_Tongue dorsum
74113
74184
+
Gln
CTG
[ENA]
¢þ
>WENV180789471
ODIT01000008
[ODIT] human metagenome; G_DNA_Tongue dorsum
140873
140802
-
Gln
CTG
[ENA]
¢þ
>WENV180807092
ODJI01000504
[ODJI] human metagenome; G_DNA_Tongue dorsum
12125
12054
-
Gln
CTG
[ENA]
¢þ
>WENV180820983
ODJS01000058
[ODJS] human metagenome; G_DNA_Tongue dorsum
26411
26482
+
Gln
CTG
[ENA]
¢þ
>WENV180852194
ODKW01000067
[ODKW] human metagenome; G_DNA_Tongue dorsum
30981
31052
+
Gln
CTG
[ENA]
¢þ
>WENV180855780
ODKZ01000019
[ODKZ] human metagenome; G_DNA_Tongue dorsum
30601
30530
-
Gln
CTG
[ENA]
¢þ
>WENV180858173
ODLC01001336
[ODLC] human metagenome; G_DNA_Tongue dorsum
6673
6602
-
Gln
CTG
[ENA]
¢þ
>WENV180863602
ODLH01000721
[ODLH] human metagenome; G_DNA_Tongue dorsum
78
7
-
Gln
CTG
[ENA]
¢þ
>WENV180865746
ODLJ01000537
[ODLJ] human metagenome; G_DNA_Tongue dorsum
18910
18839
-
Gln
CTG
[ENA]
¢þ
>WENV180877365
ODLV01000003
[ODLV] human metagenome; G_DNA_Tongue dorsum
62719
62790
+
Gln
CTG
[ENA]
¢þ
>WENV180882432
ODMC01000046
[ODMC] human metagenome; G_DNA_Tongue dorsum
45407
45336
-
Gln
CTG
[ENA]
¢þ
>WENV180916411
ODTD01000014
[ODTD] human metagenome; G_DNA_Tongue dorsum
102214
102143
-
Gln
CTG
[ENA]
¢þ
>WENV180919603
ODTH01000002
[ODTH] human metagenome; G_DNA_Tongue dorsum
76745
76816
+
Gln
CTG
[ENA]
¢þ
>WENV180931936
ODTP01016183
[ODTP] human metagenome; G_DNA_Tongue dorsum
351
280
-
Gln
CTG
[ENA]
¢þ
>WENV180946317
ODUD01034446
[ODUD] human metagenome; G_DNA_Tongue dorsum
213
142
-
Gln
CTG
[ENA]
¢þ
>WENV180947670
ODUG01000007
[ODUG] human metagenome; G_DNA_Tongue dorsum
224295
224224
-
Gln
CTG
[ENA]
¢þ
>WENV180953061
ODUI01007918
[ODUI] human metagenome; G_DNA_Tongue dorsum
182
111
-
Gln
CTG
[ENA]
¢þ
>WENV180958998
ODUM01000020
[ODUM] human metagenome; G_DNA_Tongue dorsum
101588
101517
-
Gln
CTG
[ENA]
¢þ
>WENV180967265
ODUT01000146
[ODUT] human metagenome; G_DNA_Tongue dorsum
13767
13696
-
Gln
CTG
[ENA]
¢þ
>WENV180977464
ODUZ01001029
[ODUZ] human metagenome; G_DNA_Tongue dorsum
6154
6225
+
Gln
CTG
[ENA]
¢þ
>WENV180979099
ODVC01000010
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
64392
64463
+
Gln
CTG
[ENA]
¢þ
>WENV180979116
ODVC01000013
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
17666
17595
-
Gln
CTG
[ENA]
¢þ
>WENV180984749
ODVJ01000011
[ODVJ] human metagenome; G_DNA_Tongue dorsum
33000
33071
+
Gln
CTG
[ENA]
¢þ
>WENV180988177
ODVL01000190
[ODVL] human metagenome; G_DNA_Tongue dorsum
25714
25785
+
Gln
CTG
[ENA]
¢þ
>WENV180989792
ODVN01000075
[ODVN] human metagenome; G_DNA_Tongue dorsum
62765
62836
+
Gln
CTG
[ENA]
¢þ
>WENV180991529
ODVO01000005
[ODVO] human metagenome; G_DNA_Buccal mucosa
25365
25436
+
Gln
CTG
[ENA]
¢þ
>WENV181010942
ODWI01001392
[ODWI] human metagenome; G_DNA_Tongue dorsum
3038
3109
+
Gln
CTG
[ENA]
¢þ
>WENV181014144
ODWN01016066
[ODWN] human metagenome; G_DNA_Tongue dorsum
457
386
-
Gln
CTG
[ENA]
¢þ
>WENV181015857
ODWR01000001
[ODWR] human metagenome; G_DNA_Tongue dorsum
224014
223943
-
Gln
CTG
[ENA]
¢þ
>WENV181020855
ODWV01000456
[ODWV] human metagenome; G_DNA_Tongue dorsum
15594
15665
+
Gln
CTG
[ENA]
¢þ
>WENV181033339
ODXN01005326
[ODXN] human metagenome; G_DNA_Tongue dorsum
3540
3469
-
Gln
CTG
[ENA]
¢þ
>WENV181043759
ODXV01000674
[ODXV] human metagenome; G_DNA_Tongue dorsum
15029
15100
+
Gln
CTG
[ENA]
¢þ
>WENV181051538
ODYE01000205
[ODYE] human metagenome; G_DNA_Tongue dorsum
16525
16596
+
Gln
CTG
[ENA]
¢þ
>WENV181057633
ODYL01000551
[ODYL] human metagenome; G_DNA_Tongue dorsum
6868
6797
-
Gln
CTG
[ENA]
¢þ
>WENV181059538
ODYM01002317
[ODYM] human metagenome; G_DNA_Tongue dorsum
2003
2074
+
Gln
CTG
[ENA]
¢þ
>WENV181068383
ODZZ01000005
[ODZZ] human metagenome; G_DNA_Tongue dorsum
64181
64110
-
Gln
CTG
[ENA]
¢þ
>WENV181073650
OEAO01000708
[OEAO] human metagenome; G_DNA_Tongue dorsum
2928
2999
+
Gln
CTG
[ENA]
¢þ
>WENV181084887
OEAX01000307
[OEAX] human metagenome; G_DNA_Tongue dorsum
15575
15646
+
Gln
CTG
[ENA]
¢þ
>WENV181086075
OEAY01000057
[OEAY] human metagenome; G_DNA_Tongue dorsum
14645
14574
-
Gln
CTG
[ENA]
¢þ
>WENV181096126
OEBY01055344
[OEBY] human metagenome; G_DNA_Tongue dorsum
16
87
+
Gln
CTG
[ENA]
¢þ
>WENV181096127
OEBY01055355
[OEBY] human metagenome; G_DNA_Tongue dorsum
16
87
+
Gln
CTG
[ENA]
¢þ
>WENV181096572
OECA01000014
[OECA] human metagenome; G_DNA_Tongue dorsum
62645
62716
+
Gln
CTG
[ENA]
¢þ
>WENV181101618
OECT01000101
[OECT] human metagenome; G_DNA_Tongue dorsum
18275
18204
-
Gln
CTG
[ENA]
¢þ
>WENV181103799
OECV01003764
[OECV] human metagenome; G_DNA_Throat
1776
1847
+
Gln
CTG
[ENA]
¢þ
>WENV181104584
OEED01000003
[OEED] human metagenome; G_DNA_Tongue dorsum
76388
76459
+
Gln
CTG
[ENA]
¢þ
>WENV181108352
OEEJ01000009
[OEEJ] human metagenome; G_DNA_Tongue dorsum
57791
57862
+
Gln
CTG
[ENA]
¢þ
>WENV181112325
OEEL01000394
[OEEL] human metagenome; G_DNA_Tongue dorsum
16351
16280
-
Gln
CTG
[ENA]
¢þ
>WENV181113977
OEEO01000026
[OEEO] human metagenome; G_DNA_Supragingival plaque
69187
69258
+
Gln
CTG
[ENA]
¢þ
>WENV181125659
OEFU01008740
[OEFU] human metagenome; G_DNA_Saliva
52
123
+
Gln
CTG
[ENA]
¢þ
>WENV181129979
OEFY01000227
[OEFY] human metagenome; G_DNA_Throat
9533
9462
-
Gln
CTG
[ENA]
¢þ
>WENV181141031
OEGT01000828
[OEGT] human metagenome; G_DNA_Throat
14107
14178
+
Gln
CTG
[ENA]
¢þ
>WENV181149931
OEHW01000076
[OEHW] human metagenome; G_DNA_Tongue dorsum
30304
30233
-
Gln
CTG
[ENA]
¢þ
>WENV181156913
OEIG01000005
[OEIG] human metagenome; G_DNA_Hard palate
135188
135117
-
Gln
CTG
[ENA]
¢þ
>W141226368
BAKD01000004
Bacteroidota
Hoylesella nanceiensis JCM 15639 [BAKD]
146320
146249
-
Gln
CTG
[ENA]
¡û
>W10105042
ACWZ01000009
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
135098
135169
+
Gln
CTG
[ENA]
¡û
>W11107362
ACWZ01000009
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
135098
135169
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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