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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacteroidetes
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.783574 (69 seq.)
>W131165921
ARBZ01000001
Bacteroidota
Hoylesella nanceiensis DSM 19126 [ARBZ]
733186
733115
-
Pseudo
GCA
[ENA]
¡û
>PL171000533
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
569700
569771
+
Pseudo
GCA
[ENA]
¡û
>WENV180011309
FLSK01001319
[FLSK] metagenome; saliva
1932
2003
+
Cys
GCA
[ENA]
¢þ
>WENV180551309
OCJF01007007
[OCJF] human oral metagenome; human oral
238
309
+
Cys
GCA
[ENA]
¢þ
>WENV180705434
ODEJ01004690
[ODEJ] human metagenome; G_DNA_Tongue dorsum
13
84
+
Cys
GCA
[ENA]
¢þ
>WENV180708857
ODFJ01009602
[ODFJ] human metagenome; G_DNA_Tongue dorsum
775
846
+
Cys
GCA
[ENA]
¢þ
>WENV180719401
ODGJ01001283
[ODGJ] human metagenome; G_DNA_Tongue dorsum
10483
10554
+
Cys
GCA
[ENA]
¢þ
>WENV180722223
ODGM01000015
[ODGM] human metagenome; G_DNA_Palatine Tonsils
121892
121821
-
Cys
GCA
[ENA]
¢þ
>WENV180759591
ODHY01041814
[ODHY] human metagenome; G_DNA_Buccal mucosa
238
309
+
Cys
GCA
[ENA]
¢þ
>WENV180768636
ODIG01012163
[ODIG] human metagenome; G_DNA_Tongue dorsum
410
339
-
Cys
GCA
[ENA]
¢þ
>WENV180775830
ODIK01005156
[ODIK] human metagenome; G_DNA_Tongue dorsum
3196
3125
-
Cys
GCA
[ENA]
¢þ
>WENV180779546
ODIN01006996
[ODIN] human metagenome; G_DNA_Throat
1667
1738
+
Cys
GCA
[ENA]
¢þ
>WENV180782497
ODIQ01000030
[ODIQ] human metagenome; G_DNA_Tongue dorsum
113340
113269
-
Cys
GCA
[ENA]
¢þ
>WENV180789639
ODIT01000160
[ODIT] human metagenome; G_DNA_Tongue dorsum
27459
27530
+
Cys
GCA
[ENA]
¢þ
>WENV180805471
ODJH01000017
[ODJH] human metagenome; G_DNA_Tongue dorsum
36342
36413
+
Cys
GCA
[ENA]
¢þ
>WENV180807340
ODJI01001460
[ODJI] human metagenome; G_DNA_Tongue dorsum
8792
8721
-
Cys
GCA
[ENA]
¢þ
>WENV180811115
ODJM01038737
[ODJM] human metagenome; G_DNA_Buccal mucosa
67
138
+
Cys
GCA
[ENA]
¢þ
>WENV180820949
ODJS01000024
[ODJS] human metagenome; G_DNA_Tongue dorsum
20622
20551
-
Cys
GCA
[ENA]
¢þ
>WENV180829966
ODKB01000103
[ODKB] human metagenome; G_DNA_Tongue dorsum
37669
37598
-
Cys
GCA
[ENA]
¢þ
>WENV180852247
ODKW01000171
[ODKW] human metagenome; G_DNA_Tongue dorsum
18160
18089
-
Cys
GCA
[ENA]
¢þ
>WENV180855762
ODKZ01000010
[ODKZ] human metagenome; G_DNA_Tongue dorsum
113855
113784
-
Cys
GCA
[ENA]
¢þ
>WENV180857343
ODLA01062729
[ODLA] human metagenome; G_DNA_Buccal mucosa
132
203
+
Cys
GCA
[ENA]
¢þ
>WENV180858175
ODLC01001353
[ODLC] human metagenome; G_DNA_Tongue dorsum
9762
9833
+
Cys
GCA
[ENA]
¢þ
>WENV180861172
ODLE01001248
[ODLE] human metagenome; G_DNA_Tongue dorsum
11590
11519
-
Cys
GCA
[ENA]
¢þ
>WENV180863701
ODLH01001466
[ODLH] human metagenome; G_DNA_Tongue dorsum
6662
6733
+
Cys
GCA
[ENA]
¢þ
>WENV180877360
ODLV01000002
[ODLV] human metagenome; G_DNA_Tongue dorsum
35828
35899
+
Cys
GCA
[ENA]
¢þ
>WENV180879767
ODLZ01002469
[ODLZ] human metagenome; G_DNA_Tongue dorsum
4261
4332
+
Cys
GCA
[ENA]
¢þ
>WENV180882688
ODMC01000340
[ODMC] human metagenome; G_DNA_Tongue dorsum
16234
16163
-
Cys
GCA
[ENA]
¢þ
>WENV180890841
ODMO01018526
[ODMO] human metagenome; G_DNA_Tongue dorsum
288
359
+
Cys
GCA
[ENA]
¢þ
>WENV180916494
ODTD01000105
[ODTD] human metagenome; G_DNA_Tongue dorsum
30945
31016
+
Cys
GCA
[ENA]
¢þ
>WENV180919659
ODTH01000023
[ODTH] human metagenome; G_DNA_Tongue dorsum
19583
19654
+
Cys
GCA
[ENA]
¢þ
>WENV180946300
ODUD01031561
[ODUD] human metagenome; G_DNA_Tongue dorsum
318
247
-
Cys
GCA
[ENA]
¢þ
>WENV180947841
ODUG01000058
[ODUG] human metagenome; G_DNA_Tongue dorsum
13177
13248
+
Cys
GCA
[ENA]
¢þ
>WENV180953424
ODUI01030818
[ODUI] human metagenome; G_DNA_Tongue dorsum
757
828
+
Cys
GCA
[ENA]
¢þ
>WENV180954848
ODUJ01011952
[ODUJ] human metagenome; G_DNA_Tongue dorsum
2146
2217
+
Cys
GCA
[ENA]
¢þ
>WENV180967363
ODUT01000385
[ODUT] human metagenome; G_DNA_Tongue dorsum
16520
16449
-
Cys
GCA
[ENA]
¢þ
>WENV180977480
ODUZ01001137
[ODUZ] human metagenome; G_DNA_Tongue dorsum
10221
10150
-
Cys
GCA
[ENA]
¢þ
>WENV180979094
ODVC01000008
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
74488
74417
-
Cys
GCA
[ENA]
¢þ
>WENV180979160
ODVC01000024
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
11514
11443
-
Cys
GCA
[ENA]
¢þ
>WENV180984878
ODVJ01000080
[ODVJ] human metagenome; G_DNA_Tongue dorsum
35173
35102
-
Cys
GCA
[ENA]
¢þ
>WENV180988265
ODVL01000445
[ODVL] human metagenome; G_DNA_Tongue dorsum
6154
6083
-
Cys
GCA
[ENA]
¢þ
>WENV180989737
ODVN01000048
[ODVN] human metagenome; G_DNA_Tongue dorsum
10484
10555
+
Cys
GCA
[ENA]
¢þ
>WENV180991489
ODVO01000001
[ODVO] human metagenome; G_DNA_Buccal mucosa
394924
394995
+
Cys
GCA
[ENA]
¢þ
>WENV181010935
ODWI01001248
[ODWI] human metagenome; G_DNA_Tongue dorsum
3221
3292
+
Cys
GCA
[ENA]
¢þ
>WENV181015894
ODWR01000009
[ODWR] human metagenome; G_DNA_Tongue dorsum
17448
17519
+
Cys
GCA
[ENA]
¢þ
>WENV181021429
ODWV01010793
[ODWV] human metagenome; G_DNA_Tongue dorsum
2022
2093
+
Cys
GCA
[ENA]
¢þ
>WENV181043555
ODXV01000126
[ODXV] human metagenome; G_DNA_Tongue dorsum
37200
37271
+
Cys
GCA
[ENA]
¢þ
>WENV181051887
ODYE01006638
[ODYE] human metagenome; G_DNA_Tongue dorsum
2083
2154
+
Cys
GCA
[ENA]
¢þ
>WENV181057336
ODYL01000050
[ODYL] human metagenome; G_DNA_Tongue dorsum
63575
63504
-
Cys
GCA
[ENA]
¢þ
>WENV181059292
ODYM01000451
[ODYM] human metagenome; G_DNA_Tongue dorsum
15086
15157
+
Cys
GCA
[ENA]
¢þ
>WENV181068408
ODZZ01000014
[ODZZ] human metagenome; G_DNA_Tongue dorsum
51324
51253
-
Cys
GCA
[ENA]
¢þ
>WENV181074110
OEAO01003286
[OEAO] human metagenome; G_DNA_Tongue dorsum
3074
3003
-
Cys
GCA
[ENA]
¢þ
>WENV181084899
OEAX01000346
[OEAX] human metagenome; G_DNA_Tongue dorsum
18156
18085
-
Cys
GCA
[ENA]
¢þ
>WENV181085989
OEAY01000025
[OEAY] human metagenome; G_DNA_Tongue dorsum
32029
32100
+
Cys
GCA
[ENA]
¢þ
>WENV181095136
OEBY01003433
[OEBY] human metagenome; G_DNA_Tongue dorsum
2601
2530
-
Cys
GCA
[ENA]
¢þ
>WENV181096862
OECA01000587
[OECA] human metagenome; G_DNA_Tongue dorsum
2323
2252
-
Cys
GCA
[ENA]
¢þ
>WENV181101432
OECT01000029
[OECT] human metagenome; G_DNA_Tongue dorsum
15369
15440
+
Cys
GCA
[ENA]
¢þ
>WENV181103839
OECV01005396
[OECV] human metagenome; G_DNA_Throat
1359
1430
+
Cys
GCA
[ENA]
¢þ
>WENV181108543
OEEJ01000054
[OEEJ] human metagenome; G_DNA_Tongue dorsum
87730
87659
-
Cys
GCA
[ENA]
¢þ
>WENV181112366
OEEL01000549
[OEEL] human metagenome; G_DNA_Tongue dorsum
6434
6505
+
Cys
GCA
[ENA]
¢þ
>WENV181114016
OEEO01000040
[OEEO] human metagenome; G_DNA_Supragingival plaque
85248
85177
-
Cys
GCA
[ENA]
¢þ
>WENV181119973
OEFJ01001207
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
3838
3909
+
Cys
GCA
[ENA]
¢þ
>WENV181129965
OEFY01000178
[OEFY] human metagenome; G_DNA_Throat
2960
3031
+
Cys
GCA
[ENA]
¢þ
>WENV181141194
OEGT01001692
[OEGT] human metagenome; G_DNA_Throat
3905
3834
-
Cys
GCA
[ENA]
¢þ
>WENV181150016
OEHW01000233
[OEHW] human metagenome; G_DNA_Tongue dorsum
9695
9766
+
Cys
GCA
[ENA]
¢þ
>WENV181157326
OEIG01002194
[OEIG] human metagenome; G_DNA_Hard palate
5822
5751
-
Cys
GCA
[ENA]
¢þ
>W141226346
BAKD01000001
Bacteroidota
Hoylesella nanceiensis JCM 15639 [BAKD]
37056
37127
+
Pseudo
GCA
[ENA]
¡û
>W10105021
ACWZ01000002
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
366287
366358
+
Pseudo
GCA
[ENA]
¡û
>W11107341
ACWZ01000002
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
366287
366358
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK