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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacteroidetes
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242676 (89 seq.)
>PL171000545
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1349514
1349591
+
Arg
TCT
[ENA]
¡û
>W131165931
ARBZ01000002
Bacteroidota
Hoylesella nanceiensis DSM 19126 [ARBZ]
253291
253368
+
Arg
TCT
[ENA]
¡û
>WENV180011899
FLSK01083468
[FLSK] metagenome; saliva
2159
2084
-
Arg
TCT
[ENA]
¢þ
>WENV180551215
OCJF01000164
[OCJF] human oral metagenome; human oral
635
710
+
Arg
TCT
[ENA]
¢þ
>WENV180705394
ODEJ01003907
[ODEJ] human metagenome; G_DNA_Tongue dorsum
4670
4745
+
Arg
TCT
[ENA]
¢þ
>WENV180708739
ODFJ01006308
[ODFJ] human metagenome; G_DNA_Tongue dorsum
1509
1434
-
Arg
TCT
[ENA]
¢þ
>WENV180718068
ODGE01061038
[ODGE] human metagenome; G_DNA_Buccal mucosa
55
130
+
Arg
TCT
[ENA]
¢þ
>WENV180719299
ODGJ01000625
[ODGJ] human metagenome; G_DNA_Tongue dorsum
10024
10099
+
Arg
TCT
[ENA]
¢þ
>WENV180722232
ODGM01000018
[ODGM] human metagenome; G_DNA_Palatine Tonsils
15191
15116
-
Arg
TCT
[ENA]
¢þ
>WENV180764253
ODIA01037748
[ODIA] human metagenome; G_DNA_Tongue dorsum
314
389
+
Arg
TCT
[ENA]
¢þ
>WENV180768109
ODIG01002659
[ODIG] human metagenome; G_DNA_Tongue dorsum
81
6
-
Arg
TCT
[ENA]
¢þ
>WENV180774081
ODIJ01007644
[ODIJ] human metagenome; G_DNA_Tongue dorsum
2988
2913
-
Arg
TCT
[ENA]
¢þ
>WENV180776169
ODIK01020077
[ODIK] human metagenome; G_DNA_Tongue dorsum
700
625
-
Arg
TCT
[ENA]
¢þ
>WENV180779168
ODIN01000832
[ODIN] human metagenome; G_DNA_Throat
11009
10934
-
Arg
TCT
[ENA]
¢þ
>WENV180782564
ODIQ01000048
[ODIQ] human metagenome; G_DNA_Tongue dorsum
25704
25629
-
Arg
TCT
[ENA]
¢þ
>WENV180789431
ODIT01000001
[ODIT] human metagenome; G_DNA_Tongue dorsum
243435
243360
-
Arg
TCT
[ENA]
¢þ
>WENV180791944
ODIW01000010
[ODIW] human metagenome; G_DNA_Tongue dorsum
122306
122231
-
Arg
TCT
[ENA]
¢þ
>WENV180803243
ODJE01067629
[ODJE] human metagenome; G_DNA_Tongue dorsum
97
22
-
Arg
TCT
[ENA]
¢þ
>WENV180805465
ODJH01000013
[ODJH] human metagenome; G_DNA_Tongue dorsum
23307
23232
-
Arg
TCT
[ENA]
¢þ
>WENV180808065
ODJI01040128
[ODJI] human metagenome; G_DNA_Tongue dorsum
420
345
-
Arg
TCT
[ENA]
¢þ
>WENV180820974
ODJS01000047
[ODJS] human metagenome; G_DNA_Tongue dorsum
18760
18835
+
Arg
TCT
[ENA]
¢þ
>WENV180829834
ODKB01000006
[ODKB] human metagenome; G_DNA_Tongue dorsum
21691
21616
-
Arg
TCT
[ENA]
¢þ
>WENV180852124
ODKW01000022
[ODKW] human metagenome; G_DNA_Tongue dorsum
23833
23908
+
Arg
TCT
[ENA]
¢þ
>WENV180854186
ODKX01001173
[ODKX] human metagenome; G_DNA_Tongue dorsum
3481
3556
+
Arg
TCT
[ENA]
¢þ
>WENV180855750
ODKZ01000005
[ODKZ] human metagenome; G_DNA_Tongue dorsum
170950
171025
+
Arg
TCT
[ENA]
¢þ
>WENV180858151
ODLC01001057
[ODLC] human metagenome; G_DNA_Tongue dorsum
2640
2565
-
Arg
TCT
[ENA]
¢þ
>WENV180859575
ODLD01001553
[ODLD] human metagenome; G_DNA_Supragingival plaque
5060
4985
-
Arg
TCT
[ENA]
¢þ
>WENV180860962
ODLE01000420
[ODLE] human metagenome; G_DNA_Tongue dorsum
16876
16951
+
Arg
TCT
[ENA]
¢þ
>WENV180863278
ODLG01036748
[ODLG] human metagenome; G_DNA_Buccal mucosa
91
166
+
Arg
TCT
[ENA]
¢þ
>WENV180863969
ODLH01005702
[ODLH] human metagenome; G_DNA_Tongue dorsum
886
811
-
Arg
TCT
[ENA]
¢þ
>WENV180865886
ODLJ01001321
[ODLJ] human metagenome; G_DNA_Tongue dorsum
5978
5903
-
Arg
TCT
[ENA]
¢þ
>WENV180873765
ODLP01022856
[ODLP] human metagenome; G_DNA_Tongue dorsum
41
116
+
Arg
TCT
[ENA]
¢þ
>WENV180877367
ODLV01000005
[ODLV] human metagenome; G_DNA_Tongue dorsum
15236
15161
-
Arg
TCT
[ENA]
¢þ
>WENV180879517
ODLZ01000825
[ODLZ] human metagenome; G_DNA_Tongue dorsum
6034
6109
+
Arg
TCT
[ENA]
¢þ
>WENV180882303
ODMC01000005
[ODMC] human metagenome; G_DNA_Tongue dorsum
129369
129444
+
Arg
TCT
[ENA]
¢þ
>WENV180890438
ODMO01002386
[ODMO] human metagenome; G_DNA_Tongue dorsum
4169
4094
-
Arg
TCT
[ENA]
¢þ
>WENV180897708
ODNI01060860
[ODNI] human metagenome; G_DNA_Tongue dorsum
317
242
-
Arg
TCT
[ENA]
¢þ
>WENV180902337
ODOK01040128
[ODOK] human metagenome; G_DNA_Tongue dorsum
584
509
-
Arg
TCT
[ENA]
¢þ
>WENV180916656
ODTD01000376
[ODTD] human metagenome; G_DNA_Tongue dorsum
23007
23082
+
Arg
TCT
[ENA]
¢þ
>WENV180919649
ODTH01000018
[ODTH] human metagenome; G_DNA_Tongue dorsum
138707
138782
+
Arg
TCT
[ENA]
¢þ
>WENV180931076
ODTP01001330
[ODTP] human metagenome; G_DNA_Tongue dorsum
4144
4069
-
Arg
TCT
[ENA]
¢þ
>WENV180945579
ODUC01237081
[ODUC] human metagenome; G_DNA_Supragingival plaque
46
121
+
Arg
TCT
[ENA]
¢þ
>WENV180946416
ODUD01074980
[ODUD] human metagenome; G_DNA_Tongue dorsum
111
186
+
Arg
TCT
[ENA]
¢þ
>WENV180948129
ODUG01000310
[ODUG] human metagenome; G_DNA_Tongue dorsum
77
2
-
Arg
TCT
[ENA]
¢þ
>WENV180953420
ODUI01030023
[ODUI] human metagenome; G_DNA_Tongue dorsum
87
12
-
Arg
TCT
[ENA]
¢þ
>WENV180954361
ODUJ01002021
[ODUJ] human metagenome; G_DNA_Tongue dorsum
87
12
-
Arg
TCT
[ENA]
¢þ
>WENV180958960
ODUM01000007
[ODUM] human metagenome; G_DNA_Tongue dorsum
152157
152082
-
Arg
TCT
[ENA]
¢þ
>WENV180967476
ODUT01000781
[ODUT] human metagenome; G_DNA_Tongue dorsum
12005
11930
-
Arg
TCT
[ENA]
¢þ
>WENV180977456
ODUZ01000999
[ODUZ] human metagenome; G_DNA_Tongue dorsum
11942
12017
+
Arg
TCT
[ENA]
¢þ
>WENV180979145
ODVC01000020
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
145456
145381
-
Arg
TCT
[ENA]
¢þ
>WENV180984736
ODVJ01000005
[ODVJ] human metagenome; G_DNA_Tongue dorsum
85250
85175
-
Arg
TCT
[ENA]
¢þ
>WENV180988445
ODVL01001537
[ODVL] human metagenome; G_DNA_Tongue dorsum
2501
2426
-
Arg
TCT
[ENA]
¢þ
>WENV180989783
ODVN01000069
[ODVN] human metagenome; G_DNA_Tongue dorsum
97020
97095
+
Arg
TCT
[ENA]
¢þ
>WENV180991568
ODVO01000025
[ODVO] human metagenome; G_DNA_Buccal mucosa
26265
26190
-
Arg
TCT
[ENA]
¢þ
>WENV181006438
ODWA01022142
[ODWA] human metagenome; G_DNA_Buccal mucosa
191
116
-
Arg
TCT
[ENA]
¢þ
>WENV181010818
ODWI01000275
[ODWI] human metagenome; G_DNA_Tongue dorsum
13085
13010
-
Arg
TCT
[ENA]
¢þ
>WENV181014102
ODWN01013522
[ODWN] human metagenome; G_DNA_Tongue dorsum
1813
1888
+
Arg
TCT
[ENA]
¢þ
>WENV181015949
ODWR01000032
[ODWR] human metagenome; G_DNA_Tongue dorsum
13468
13393
-
Arg
TCT
[ENA]
¢þ
>WENV181021590
ODWV01020727
[ODWV] human metagenome; G_DNA_Tongue dorsum
1091
1166
+
Arg
TCT
[ENA]
¢þ
>WENV181033497
ODXN01009757
[ODXN] human metagenome; G_DNA_Tongue dorsum
2086
2011
-
Arg
TCT
[ENA]
¢þ
>WENV181039373
ODXQ01018928
[ODXQ] human metagenome; G_DNA_Tongue dorsum
164
239
+
Arg
TCT
[ENA]
¢þ
>WENV181041718
ODXS01033757
[ODXS] human metagenome; G_DNA_Tongue dorsum
21
96
+
Arg
TCT
[ENA]
¢þ
>WENV181044021
ODXV01002319
[ODXV] human metagenome; G_DNA_Tongue dorsum
155
80
-
Arg
TCT
[ENA]
¢þ
>WENV181051629
ODYE01000578
[ODYE] human metagenome; G_DNA_Tongue dorsum
816
891
+
Arg
TCT
[ENA]
¢þ
>WENV181057327
ODYL01000043
[ODYL] human metagenome; G_DNA_Tongue dorsum
71768
71693
-
Arg
TCT
[ENA]
¢þ
>WENV181059228
ODYM01000122
[ODYM] human metagenome; G_DNA_Tongue dorsum
21740
21815
+
Arg
TCT
[ENA]
¢þ
>WENV181066086
ODYV01053174
[ODYV] human metagenome; G_DNA_Buccal mucosa
279
204
-
Arg
TCT
[ENA]
¢þ
>WENV181068384
ODZZ01000006
[ODZZ] human metagenome; G_DNA_Tongue dorsum
48872
48947
+
Arg
TCT
[ENA]
¢þ
>WENV181074398
OEAO01007336
[OEAO] human metagenome; G_DNA_Tongue dorsum
780
855
+
Arg
TCT
[ENA]
¢þ
>WENV181084949
OEAX01000614
[OEAX] human metagenome; G_DNA_Tongue dorsum
17507
17432
-
Arg
TCT
[ENA]
¢þ
>WENV181085871
OEAY01000003
[OEAY] human metagenome; G_DNA_Tongue dorsum
234089
234164
+
Arg
TCT
[ENA]
¢þ
>WENV181094842
OEBY01001457
[OEBY] human metagenome; G_DNA_Tongue dorsum
13609
13534
-
Arg
TCT
[ENA]
¢þ
>WENV181096570
OECA01000013
[OECA] human metagenome; G_DNA_Tongue dorsum
11907
11832
-
Arg
TCT
[ENA]
¢þ
>WENV181101384
OECT01000006
[OECT] human metagenome; G_DNA_Tongue dorsum
131814
131889
+
Arg
TCT
[ENA]
¢þ
>WENV181103910
OECV01008764
[OECV] human metagenome; G_DNA_Throat
873
948
+
Arg
TCT
[ENA]
¢þ
>WENV181105195
OEED01001675
[OEED] human metagenome; G_DNA_Tongue dorsum
788
713
-
Arg
TCT
[ENA]
¢þ
>WENV181108695
OEEJ01000180
[OEEJ] human metagenome; G_DNA_Tongue dorsum
47207
47282
+
Arg
TCT
[ENA]
¢þ
>WENV181111909
OEEL01000029
[OEEL] human metagenome; G_DNA_Tongue dorsum
118435
118360
-
Arg
TCT
[ENA]
¢þ
>WENV181113978
OEEO01000027
[OEEO] human metagenome; G_DNA_Supragingival plaque
31336
31411
+
Arg
TCT
[ENA]
¢þ
>WENV181125731
OEFU01018455
[OEFU] human metagenome; G_DNA_Saliva
404
479
+
Arg
TCT
[ENA]
¢þ
>WENV181130057
OEFY01000552
[OEFY] human metagenome; G_DNA_Throat
13051
12976
-
Arg
TCT
[ENA]
¢þ
>WENV181139837
OEGN01028307
[OEGN] human metagenome; G_DNA_Tongue dorsum
349
424
+
Arg
TCT
[ENA]
¢þ
>WENV181140958
OEGT01000479
[OEGT] human metagenome; G_DNA_Throat
9187
9262
+
Arg
TCT
[ENA]
¢þ
>WENV181150102
OEHW01000472
[OEHW] human metagenome; G_DNA_Tongue dorsum
16714
16789
+
Arg
TCT
[ENA]
¢þ
>WENV181157008
OEIG01000076
[OEIG] human metagenome; G_DNA_Hard palate
15732
15657
-
Arg
TCT
[ENA]
¢þ
>WENV181176199
OEJR01000136
[OEJR] human metagenome; G_DNA_Saliva
11599
11524
-
Arg
TCT
[ENA]
¢þ
>W141226360
BAKD01000002
Bacteroidota
Hoylesella nanceiensis JCM 15639 [BAKD]
277498
277421
-
Arg
TCT
[ENA]
¡û
>W10105037
ACWZ01000003
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
170622
170545
-
Arg
TCT
[ENA]
¡û
>W11107357
ACWZ01000003
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
170622
170545
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK