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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacteroidetes
Anticodon = TGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88765 (126 seq.)
>W1711066345
LSCT01000182
Bacteroidota
Bacteroidales bacterium KA00344 [LSCT]
20907
20994
+
Ser
TGA
[ENA]
¡û
>W1711067087
LSDM01000085
Bacteroidota
Prevotella sp. DNF00663 [LSDM]
3031
2946
-
Ser
TGA
[ENA]
¡û
>PL171000557
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
206165
206078
-
Ser
TGA
[ENA]
¡û
>W131165947
ARBZ01000006
Bacteroidota
Hoylesella nanceiensis DSM 19126 [ARBZ]
106858
106945
+
Ser
TGA
[ENA]
¡û
>W131236264
AUMG01000019
Bacteroidota
Hoylesella timonensis 4401737 = DSM 22865 = JCM 15640 [AUMG]
47408
47495
+
Ser
TGA
[ENA]
¡û
>WENV180119247
OASD01025976
[OASD] human gut metagenome; ENVO:feces
509
424
-
Ser
TGA
[ENA]
¢þ
>WENV180403395
OBRT01000077
[OBRT] human gut metagenome; ENVO:feces
15078
14993
-
Ser
TGA
[ENA]
¢þ
>WENV180405359
OBTM01002539
[OBTM] human gut metagenome; ENVO:feces
36
121
+
Ser
TGA
[ENA]
¢þ
>WENV180469984
OBYM01034801
[OBYM] human gut metagenome; faeces
161
76
-
Ser
TGA
[ENA]
¢þ
>WENV180551269
OCJF01002480
[OCJF] human oral metagenome; human oral
249
334
+
Ser
TGA
[ENA]
¢þ
>WENV180575085
OCLX01068059
[OCLX] human gut metagenome; human gut
74
159
+
Ser
TGA
[ENA]
¢þ
>WENV180597382
OCPL01000093
[OCPL] human gut metagenome; ENVO:feces
1211
1296
+
Ser
TGA
[ENA]
¢þ
>WENV180705498
ODEJ01006418
[ODEJ] human metagenome; G_DNA_Tongue dorsum
3094
3179
+
Ser
TGA
[ENA]
¢þ
>WENV180708627
ODFJ01003975
[ODFJ] human metagenome; G_DNA_Tongue dorsum
2243
2158
-
Ser
TGA
[ENA]
¢þ
>WENV180712518
ODFT01002052
[ODFT] human metagenome; G_DNA_Posterior fornix
1111
1196
+
Ser
TGA
[ENA]
¢þ
>WENV180718589
ODGG01021640
[ODGG] human metagenome; G_DNA_Buccal mucosa
136
221
+
Ser
TGA
[ENA]
¢þ
>WENV180720000
ODGJ01013040
[ODGJ] human metagenome; G_DNA_Tongue dorsum
449
364
-
Ser
TGA
[ENA]
¢þ
>WENV180722180
ODGM01000004
[ODGM] human metagenome; G_DNA_Palatine Tonsils
142094
142009
-
Ser
TGA
[ENA]
¢þ
>WENV180759450
ODHY01014890
[ODHY] human metagenome; G_DNA_Buccal mucosa
855
940
+
Ser
TGA
[ENA]
¢þ
>WENV180769184
ODIG01041264
[ODIG] human metagenome; G_DNA_Tongue dorsum
268
183
-
Ser
TGA
[ENA]
¢þ
>WENV180775685
ODIK01002507
[ODIK] human metagenome; G_DNA_Tongue dorsum
113
28
-
Ser
TGA
[ENA]
¢þ
>WENV180779732
ODIN01013931
[ODIN] human metagenome; G_DNA_Throat
1331
1416
+
Ser
TGA
[ENA]
¢þ
>WENV180783625
ODIQ01014015
[ODIQ] human metagenome; G_DNA_Tongue dorsum
1332
1417
+
Ser
TGA
[ENA]
¢þ
>WENV180786364
ODIR01197295
[ODIR] human metagenome; G_DNA_Stool
150
65
-
Ser
TGA
[ENA]
¢þ
>WENV180789681
ODIT01000263
[ODIT] human metagenome; G_DNA_Tongue dorsum
5934
6019
+
Ser
TGA
[ENA]
¢þ
>WENV180793006
ODIW01005756
[ODIW] human metagenome; G_DNA_Tongue dorsum
4233
4318
+
Ser
TGA
[ENA]
¢þ
>WENV180806096
ODJH01001771
[ODJH] human metagenome; G_DNA_Tongue dorsum
5075
5160
+
Ser
TGA
[ENA]
¢þ
>WENV180807713
ODJI01007508
[ODJI] human metagenome; G_DNA_Tongue dorsum
274
189
-
Ser
TGA
[ENA]
¢þ
>WENV180811098
ODJM01030453
[ODJM] human metagenome; G_DNA_Buccal mucosa
27
112
+
Ser
TGA
[ENA]
¢þ
>WENV180821316
ODJS01004189
[ODJS] human metagenome; G_DNA_Tongue dorsum
86
1
-
Ser
TGA
[ENA]
¢þ
>WENV180829900
ODKB01000036
[ODKB] human metagenome; G_DNA_Tongue dorsum
126
41
-
Ser
TGA
[ENA]
¢þ
>WENV180852995
ODKW01016285
[ODKW] human metagenome; G_DNA_Tongue dorsum
86
1
-
Ser
TGA
[ENA]
¢þ
>WENV180855815
ODKZ01000057
[ODKZ] human metagenome; G_DNA_Tongue dorsum
56544
56629
+
Ser
TGA
[ENA]
¢þ
>WENV180858529
ODLC01009817
[ODLC] human metagenome; G_DNA_Tongue dorsum
86
1
-
Ser
TGA
[ENA]
¢þ
>WENV180859931
ODLD01008425
[ODLD] human metagenome; G_DNA_Supragingival plaque
251
166
-
Ser
TGA
[ENA]
¢þ
>WENV180861250
ODLE01001749
[ODLE] human metagenome; G_DNA_Tongue dorsum
99
14
-
Ser
TGA
[ENA]
¢þ
>WENV180864555
ODLH01062859
[ODLH] human metagenome; G_DNA_Tongue dorsum
375
460
+
Ser
TGA
[ENA]
¢þ
>WENV180866240
ODLJ01008522
[ODLJ] human metagenome; G_DNA_Tongue dorsum
266
181
-
Ser
TGA
[ENA]
¢þ
>WENV180877972
ODLV01007278
[ODLV] human metagenome; G_DNA_Tongue dorsum
2694
2779
+
Ser
TGA
[ENA]
¢þ
>WENV180879568
ODLZ01001018
[ODLZ] human metagenome; G_DNA_Tongue dorsum
10314
10229
-
Ser
TGA
[ENA]
¢þ
>WENV180882586
ODMC01000171
[ODMC] human metagenome; G_DNA_Tongue dorsum
58401
58486
+
Ser
TGA
[ENA]
¢þ
>WENV180916887
ODTD01001925
[ODTD] human metagenome; G_DNA_Tongue dorsum
1635
1550
-
Ser
TGA
[ENA]
¢þ
>WENV180920317
ODTH01003490
[ODTH] human metagenome; G_DNA_Tongue dorsum
5932
6017
+
Ser
TGA
[ENA]
¢þ
>WENV180931903
ODTP01014475
[ODTP] human metagenome; G_DNA_Tongue dorsum
125
40
-
Ser
TGA
[ENA]
¢þ
>WENV180943034
ODUA01009606
[ODUA] human metagenome; G_DNA_Posterior fornix
67
152
+
Ser
TGA
[ENA]
¢þ
>WENV180948655
ODUG01002746
[ODUG] human metagenome; G_DNA_Tongue dorsum
4474
4389
-
Ser
TGA
[ENA]
¢þ
>WENV180952788
ODUI01002315
[ODUI] human metagenome; G_DNA_Tongue dorsum
680
765
+
Ser
TGA
[ENA]
¢þ
>WENV180954539
ODUJ01003452
[ODUJ] human metagenome; G_DNA_Tongue dorsum
128
43
-
Ser
TGA
[ENA]
¢þ
>WENV180959620
ODUM01001746
[ODUM] human metagenome; G_DNA_Tongue dorsum
4598
4513
-
Ser
TGA
[ENA]
¢þ
>WENV180967494
ODUT01000839
[ODUT] human metagenome; G_DNA_Tongue dorsum
11148
11063
-
Ser
TGA
[ENA]
¢þ
>WENV180977717
ODUZ01003636
[ODUZ] human metagenome; G_DNA_Tongue dorsum
2885
2970
+
Ser
TGA
[ENA]
¢þ
>WENV180979142
ODVC01000019
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
144010
144095
+
Ser
TGA
[ENA]
¢þ
>WENV180984773
ODVJ01000024
[ODVJ] human metagenome; G_DNA_Tongue dorsum
11418
11333
-
Ser
TGA
[ENA]
¢þ
>WENV180988226
ODVL01000315
[ODVL] human metagenome; G_DNA_Tongue dorsum
27683
27768
+
Ser
TGA
[ENA]
¢þ
>WENV180990088
ODVN01000364
[ODVN] human metagenome; G_DNA_Tongue dorsum
113
28
-
Ser
TGA
[ENA]
¢þ
>WENV180991490
ODVO01000001
[ODVO] human metagenome; G_DNA_Buccal mucosa
67613
67528
-
Ser
TGA
[ENA]
¢þ
>WENV181010950
ODWI01001570
[ODWI] human metagenome; G_DNA_Tongue dorsum
3754
3669
-
Ser
TGA
[ENA]
¢þ
>WENV181016821
ODWR01008323
[ODWR] human metagenome; G_DNA_Tongue dorsum
113
28
-
Ser
TGA
[ENA]
¢þ
>WENV181018288
ODWT01001662
[ODWT] human metagenome; G_DNA_Stool
5325
5410
+
Ser
TGA
[ENA]
¢þ
>WENV181021437
ODWV01011129
[ODWV] human metagenome; G_DNA_Tongue dorsum
225
140
-
Ser
TGA
[ENA]
¢þ
>WENV181044199
ODXV01004276
[ODXV] human metagenome; G_DNA_Tongue dorsum
104
19
-
Ser
TGA
[ENA]
¢þ
>WENV181052024
ODYE01013288
[ODYE] human metagenome; G_DNA_Tongue dorsum
1088
1173
+
Ser
TGA
[ENA]
¢þ
>WENV181058374
ODYL01009322
[ODYL] human metagenome; G_DNA_Tongue dorsum
112
27
-
Ser
TGA
[ENA]
¢þ
>WENV181068415
ODZZ01000029
[ODZZ] human metagenome; G_DNA_Tongue dorsum
66136
66221
+
Ser
TGA
[ENA]
¢þ
>WENV181074289
OEAO01005348
[OEAO] human metagenome; G_DNA_Tongue dorsum
4388
4303
-
Ser
TGA
[ENA]
¢þ
>WENV181085460
OEAX01010904
[OEAX] human metagenome; G_DNA_Tongue dorsum
1322
1407
+
Ser
TGA
[ENA]
¢þ
>WENV181086867
OEAY01004730
[OEAY] human metagenome; G_DNA_Tongue dorsum
2931
3016
+
Ser
TGA
[ENA]
¢þ
>WENV181095650
OEBY01015043
[OEBY] human metagenome; G_DNA_Tongue dorsum
128
43
-
Ser
TGA
[ENA]
¢þ
>WENV181096641
OECA01000079
[OECA] human metagenome; G_DNA_Tongue dorsum
52394
52479
+
Ser
TGA
[ENA]
¢þ
>WENV181102558
OECT01005357
[OECT] human metagenome; G_DNA_Tongue dorsum
2907
2992
+
Ser
TGA
[ENA]
¢þ
>WENV181105483
OEED01005292
[OEED] human metagenome; G_DNA_Tongue dorsum
2194
2109
-
Ser
TGA
[ENA]
¢þ
>WENV181108648
OEEJ01000132
[OEEJ] human metagenome; G_DNA_Tongue dorsum
1643
1558
-
Ser
TGA
[ENA]
¢þ
>WENV181112885
OEEL01005060
[OEEL] human metagenome; G_DNA_Tongue dorsum
2065
1980
-
Ser
TGA
[ENA]
¢þ
>WENV181114636
OEEO01002294
[OEEO] human metagenome; G_DNA_Supragingival plaque
5112
5197
+
Ser
TGA
[ENA]
¢þ
>WENV181122125
OEFL01088651
[OEFL] human metagenome; G_DNA_Supragingival plaque
294
209
-
Ser
TGA
[ENA]
¢þ
>WENV181130009
OEFY01000353
[OEFY] human metagenome; G_DNA_Throat
9596
9681
+
Ser
TGA
[ENA]
¢þ
>WENV181139680
OEGN01018897
[OEGN] human metagenome; G_DNA_Tongue dorsum
113
28
-
Ser
TGA
[ENA]
¢þ
>WENV181141623
OEGT01010663
[OEGT] human metagenome; G_DNA_Throat
113
28
-
Ser
TGA
[ENA]
¢þ
>WENV181150936
OEHW01011678
[OEHW] human metagenome; G_DNA_Tongue dorsum
2713
2798
+
Ser
TGA
[ENA]
¢þ
>WENV181156916
OEIG01000008
[OEIG] human metagenome; G_DNA_Hard palate
44614
44529
-
Ser
TGA
[ENA]
¢þ
>W141147587
AWXC01000021
Bacteroidota
Prevotella sp. BV3P1 [AWXC]
19469
19556
+
Ser
TGA
[ENA]
¡û
>W141226374
BAKD01000008
Bacteroidota
Hoylesella nanceiensis JCM 15639 [BAKD]
28865
28778
-
Ser
TGA
[ENA]
¡û
>W141226400
BAKE01000018
Bacteroidota
Hoylesella timonensis 4401737 = DSM 22865 = JCM 15640 [BAKE]
158
71
-
Ser
TGA
[ENA]
¡û
>WENV182422290
OIGV01001541
[OIGV] human gut metagenome; human gut
1467
1382
-
Ser
TGA
[ENA]
¢þ
>WENV182428984
OIIB01001837
[OIIB] human gut metagenome; human gut
2543
2628
+
Ser
TGA
[ENA]
¢þ
>WENV182432788
OIIP01001666
[OIIP] human gut metagenome; human gut
2543
2628
+
Ser
TGA
[ENA]
¢þ
>WENV182476943
OIQI01001712
[OIQI] human gut metagenome; human gut
1467
1382
-
Ser
TGA
[ENA]
¢þ
>WENV182478142
OIQM01002111
[OIQM] human gut metagenome; human gut
226
141
-
Ser
TGA
[ENA]
¢þ
>WENV182480469
OIQX01001347
[OIQX] human gut metagenome; human gut
3286
3371
+
Ser
TGA
[ENA]
¢þ
>WENV182484758
OIRN01001224
[OIRN] human gut metagenome; human gut
3286
3371
+
Ser
TGA
[ENA]
¢þ
>WENV182488648
OISA01001981
[OISA] human gut metagenome; human gut
226
141
-
Ser
TGA
[ENA]
¢þ
>WENV182492680
OISS01001942
[OISS] human gut metagenome; human gut
128
43
-
Ser
TGA
[ENA]
¢þ
>WENV182494439
OISY01002377
[OISY] human gut metagenome; human gut
2543
2628
+
Ser
TGA
[ENA]
¢þ
>WENV182497834
OITM01002072
[OITM] human gut metagenome; human gut
226
141
-
Ser
TGA
[ENA]
¢þ
>WENV182505328
OIUX01001798
[OIUX] human gut metagenome; human gut
1467
1382
-
Ser
TGA
[ENA]
¢þ
>WENV182508137
OIVP01001777
[OIVP] human gut metagenome; human gut
1467
1382
-
Ser
TGA
[ENA]
¢þ
>W141251510
CBQQ010000003
Bacteroidota
Hoylesella timonensis 4401737 = DSM 22865 = JCM 15640 [CBQQ]
6493
6406
-
Ser
TGA
[ENA]
¡û
>WENV182622785
OJKK01001593
[OJKK] metagenome; faeces
3607
3692
+
Ser
TGA
[ENA]
¢þ
>WENV182623763
OJKN01002426
[OJKN] metagenome; surface
806
721
-
Ser
TGA
[ENA]
¢þ
>WENV182640935
OJLE01000264
[OJLE] metagenome; surface
15328
15413
+
Ser
TGA
[ENA]
¢þ
>WENV182644208
OJLW01012886
[OJLW] metagenome; surface
1440
1525
+
Ser
TGA
[ENA]
¢þ
>WENV182645444
OJLY01023251
[OJLY] metagenome; surface
537
622
+
Ser
TGA
[ENA]
¢þ
>WENV182772661
OJRY01004119
[OJRY] human gut metagenome; human gut
4411
4496
+
Ser
TGA
[ENA]
¢þ
>WENV182984504
OKZM01001824
[OKZM] human gut metagenome; human gut
2543
2628
+
Ser
TGA
[ENA]
¢þ
>WENV183007094
OLDG01002262
[OLDG] human gut metagenome; human gut
2543
2628
+
Ser
TGA
[ENA]
¢þ
>WENV183016499
OLES01002089
[OLES] human gut metagenome; human gut
226
141
-
Ser
TGA
[ENA]
¢þ
>WENV183020430
OLFF01001982
[OLFF] human gut metagenome; human gut
3286
3371
+
Ser
TGA
[ENA]
¢þ
>W09127089
ACKS01000056
Bacteroidota
Hallella bergensis DSM 17361 [ACKS]
1848
1763
-
Ser
TGA
[ENA]
¡û
>W1910844966
NBAX01000002
Bacteroidota
Hoylesella timonensis DNF00076 [NBAX]
162792
162707
-
Ser
TGA
[ENA]
¡û
>W1911504140
OESU01000007
Bacteroidota
Metaprevotella massiliensis Marseille-P3114 [OESU]
1362
1447
+
Ser
TGA
[ENA]
¡û
>W1911595460
PNGI01000033
Bacteroidota
Hoylesella timonensis UMB0818 [PNGI]
28460
28375
-
Ser
TGA
[ENA]
¡û
>W1911595494
PNGJ01000004
Bacteroidota
Hoylesella buccalis UMB0536 [PNGJ]
5052
4967
-
Ser
TGA
[ENA]
¡û
>W1810577035
QENY01000001
Bacteroidota
Hallella colorans DSM 100333 [QENY]
162172
162257
+
Ser
TGA
[ENA]
¡û
>W10105031
ACWZ01000002
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
2753
2666
-
Ser
TGA
[ENA]
¡û
>W10112177
ADEF01000065
Bacteroidota
Hoylesella timonensis CRIS 5C-B1 [ADEF]
240
153
-
Ser
TGA
[ENA]
¡û
>W10112199
ADEG01000035
Bacteroidota
Hoylesella buccalis ATCC 35310 [ADEG]
11226
11139
-
Ser
TGA
[ENA]
¡û
>W11107351
ACWZ01000002
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
2753
2666
-
Ser
TGA
[ENA]
¡û
>W1510645240
CVNZ01003261
Chlamydiota
Chlamydia trachomatis H17IMS [CVNZ]
362
275
-
Ser
TGA
[ENA]
¡û
>W11115242
ADEF01000065
Bacteroidota
Hoylesella timonensis CRIS 5C-B1 [ADEF]
240
153
-
Ser
TGA
[ENA]
¡û
>W11115264
ADEG01000035
Bacteroidota
Hoylesella buccalis ATCC 35310 [ADEG]
11226
11139
-
Ser
TGA
[ENA]
¡û
>W1511351728
JRNN01000003
Bacteroidota
Hoylesella buccalis DNF00853 [JRNN]
17168
17255
+
Ser
TGA
[ENA]
¡û
>W1511351847
JRNP01000059
Bacteroidota
Hoylesella buccalis DNF00985 [JRNP]
14872
14957
+
Ser
TGA
[ENA]
¡û
>W1511353825
JRPQ01000191
Bacteroidota
Hoylesella timonensis S9-PR14 [JRPQ]
4728
4815
+
Ser
TGA
[ENA]
¡û
>W1511353965
JRPT01000083
Bacteroidota
Prevotella sp. S7 MS 2 [JRPT]
13210
13123
-
Ser
TGA
[ENA]
¡û
>W1610906915
LSCT01000182
Bacteroidota
Bacteroidales bacterium KA00344 [LSCT]
20907
20994
+
Ser
TGA
[ENA]
¡û
>W1610907657
LSDM01000085
Bacteroidota
Prevotella sp. DNF00663 [LSDM]
3031
2946
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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