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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacteroidetes
Anticodon = TTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.783573 (94 seq.)
>W131165932
ARBZ01000002
Bacteroidota
Hoylesella nanceiensis DSM 19126 [ARBZ]
448077
448150
+
Gln
TTG
[ENA]
¡û
>PL171000543
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1169312
1169385
+
Gln
TTG
[ENA]
¡û
>WENV180011226
FLSK01000083
[FLSK] metagenome; saliva
12951
12880
-
Gln
TTG
[ENA]
¢þ
>WENV180226188
OBBP01084529
[OBBP] human oral metagenome; human oral
160
89
-
Gln
TTG
[ENA]
¢þ
>WENV180551328
OCJF01010114
[OCJF] human oral metagenome; human oral
376
305
-
Gln
TTG
[ENA]
¢þ
>WENV180705140
ODEJ01001006
[ODEJ] human metagenome; G_DNA_Tongue dorsum
938
1009
+
Gln
TTG
[ENA]
¢þ
>WENV180708416
ODFJ01001521
[ODFJ] human metagenome; G_DNA_Tongue dorsum
6203
6132
-
Gln
TTG
[ENA]
¢þ
>WENV180719349
ODGJ01000900
[ODGJ] human metagenome; G_DNA_Tongue dorsum
7904
7975
+
Gln
TTG
[ENA]
¢þ
>WENV180722215
ODGM01000011
[ODGM] human metagenome; G_DNA_Palatine Tonsils
15029
15100
+
Gln
TTG
[ENA]
¢þ
>WENV180725235
ODGR01022512
[ODGR] human metagenome; G_DNA_Tongue dorsum
156
85
-
Gln
TTG
[ENA]
¢þ
>WENV180759386
ODHY01008757
[ODHY] human metagenome; G_DNA_Buccal mucosa
761
832
+
Gln
TTG
[ENA]
¢þ
>WENV180764226
ODIA01030937
[ODIA] human metagenome; G_DNA_Tongue dorsum
505
576
+
Gln
TTG
[ENA]
¢þ
>WENV180768167
ODIG01003313
[ODIG] human metagenome; G_DNA_Tongue dorsum
7175
7104
-
Gln
TTG
[ENA]
¢þ
>WENV180774188
ODIJ01011645
[ODIJ] human metagenome; G_DNA_Tongue dorsum
915
986
+
Gln
TTG
[ENA]
¢þ
>WENV180775689
ODIK01002640
[ODIK] human metagenome; G_DNA_Tongue dorsum
411
340
-
Gln
TTG
[ENA]
¢þ
>WENV180779312
ODIN01002179
[ODIN] human metagenome; G_DNA_Throat
34
105
+
Gln
TTG
[ENA]
¢þ
>WENV180782435
ODIQ01000013
[ODIQ] human metagenome; G_DNA_Tongue dorsum
123561
123490
-
Gln
TTG
[ENA]
¢þ
>WENV180789432
ODIT01000001
[ODIT] human metagenome; G_DNA_Tongue dorsum
56226
56155
-
Gln
TTG
[ENA]
¢þ
>WENV180792143
ODIW01000085
[ODIW] human metagenome; G_DNA_Tongue dorsum
15130
15201
+
Gln
TTG
[ENA]
¢þ
>WENV180803048
ODJE01027618
[ODJE] human metagenome; G_DNA_Tongue dorsum
286
357
+
Gln
TTG
[ENA]
¢þ
>WENV180805647
ODJH01000088
[ODJH] human metagenome; G_DNA_Tongue dorsum
60205
60276
+
Gln
TTG
[ENA]
¢þ
>WENV180806909
ODJI01000131
[ODJI] human metagenome; G_DNA_Tongue dorsum
21633
21562
-
Gln
TTG
[ENA]
¢þ
>WENV180816868
ODJP01086977
[ODJP] human metagenome; G_DNA_Tongue dorsum
151
80
-
Gln
TTG
[ENA]
¢þ
>WENV180820952
ODJS01000027
[ODJS] human metagenome; G_DNA_Tongue dorsum
9372
9301
-
Gln
TTG
[ENA]
¢þ
>WENV180829969
ODKB01000115
[ODKB] human metagenome; G_DNA_Tongue dorsum
3575
3646
+
Gln
TTG
[ENA]
¢þ
>WENV180852192
ODKW01000061
[ODKW] human metagenome; G_DNA_Tongue dorsum
1079
1150
+
Gln
TTG
[ENA]
¢þ
>WENV180854263
ODKX01001776
[ODKX] human metagenome; G_DNA_Tongue dorsum
7420
7349
-
Gln
TTG
[ENA]
¢þ
>WENV180855760
ODKZ01000009
[ODKZ] human metagenome; G_DNA_Tongue dorsum
86036
85965
-
Gln
TTG
[ENA]
¢þ
>WENV180858238
ODLC01002255
[ODLC] human metagenome; G_DNA_Tongue dorsum
6207
6136
-
Gln
TTG
[ENA]
¢þ
>WENV180860192
ODLD01029156
[ODLD] human metagenome; G_DNA_Supragingival plaque
403
332
-
Gln
TTG
[ENA]
¢þ
>WENV180860779
ODLE01000099
[ODLE] human metagenome; G_DNA_Tongue dorsum
733
804
+
Gln
TTG
[ENA]
¢þ
>WENV180864157
ODLH01013481
[ODLH] human metagenome; G_DNA_Tongue dorsum
54
125
+
Gln
TTG
[ENA]
¢þ
>WENV180865398
ODLJ01000022
[ODLJ] human metagenome; G_DNA_Tongue dorsum
64196
64125
-
Gln
TTG
[ENA]
¢þ
>WENV180873267
ODLP01002634
[ODLP] human metagenome; G_DNA_Tongue dorsum
3827
3756
-
Gln
TTG
[ENA]
¢þ
>WENV180877395
ODLV01000019
[ODLV] human metagenome; G_DNA_Tongue dorsum
44359
44288
-
Gln
TTG
[ENA]
¢þ
>WENV180880546
ODLZ01029987
[ODLZ] human metagenome; G_DNA_Tongue dorsum
413
342
-
Gln
TTG
[ENA]
¢þ
>WENV180882254
ODMB01078098
[ODMB] human metagenome; G_DNA_Buccal mucosa
103
174
+
Gln
TTG
[ENA]
¢þ
>WENV180882320
ODMC01000009
[ODMC] human metagenome; G_DNA_Tongue dorsum
170541
170470
-
Gln
TTG
[ENA]
¢þ
>WENV180890630
ODMO01007151
[ODMO] human metagenome; G_DNA_Tongue dorsum
376
447
+
Gln
TTG
[ENA]
¢þ
>WENV180897481
ODNI01028147
[ODNI] human metagenome; G_DNA_Tongue dorsum
514
443
-
Gln
TTG
[ENA]
¢þ
>WENV180916532
ODTD01000160
[ODTD] human metagenome; G_DNA_Tongue dorsum
25358
25429
+
Gln
TTG
[ENA]
¢þ
>WENV180919641
ODTH01000012
[ODTH] human metagenome; G_DNA_Tongue dorsum
152775
152704
-
Gln
TTG
[ENA]
¢þ
>WENV180931494
ODTP01004954
[ODTP] human metagenome; G_DNA_Tongue dorsum
2730
2801
+
Gln
TTG
[ENA]
¢þ
>WENV180947557
ODUF01031998
[ODUF] human metagenome; G_DNA_Supragingival plaque
52
123
+
Gln
TTG
[ENA]
¢þ
>WENV180948420
ODUG01001196
[ODUG] human metagenome; G_DNA_Tongue dorsum
12441
12512
+
Gln
TTG
[ENA]
¢þ
>WENV180952622
ODUI01000769
[ODUI] human metagenome; G_DNA_Tongue dorsum
491
562
+
Gln
TTG
[ENA]
¢þ
>WENV180954919
ODUJ01015464
[ODUJ] human metagenome; G_DNA_Tongue dorsum
1432
1361
-
Gln
TTG
[ENA]
¢þ
>WENV180959197
ODUM01000148
[ODUM] human metagenome; G_DNA_Tongue dorsum
23504
23433
-
Gln
TTG
[ENA]
¢þ
>WENV180968423
ODUT01023606
[ODUT] human metagenome; G_DNA_Tongue dorsum
723
794
+
Gln
TTG
[ENA]
¢þ
>WENV180977501
ODUZ01001301
[ODUZ] human metagenome; G_DNA_Tongue dorsum
10576
10505
-
Gln
TTG
[ENA]
¢þ
>WENV180979058
ODVC01000001
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
267914
267985
+
Gln
TTG
[ENA]
¢þ
>WENV180979086
ODVC01000007
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
23080
23151
+
Gln
TTG
[ENA]
¢þ
>WENV180985199
ODVJ01001205
[ODVJ] human metagenome; G_DNA_Tongue dorsum
54
125
+
Gln
TTG
[ENA]
¢þ
>WENV180988642
ODVL01004638
[ODVL] human metagenome; G_DNA_Tongue dorsum
110
39
-
Gln
TTG
[ENA]
¢þ
>WENV180990224
ODVN01000620
[ODVN] human metagenome; G_DNA_Tongue dorsum
13656
13585
-
Gln
TTG
[ENA]
¢þ
>WENV180991513
ODVO01000003
[ODVO] human metagenome; G_DNA_Buccal mucosa
150741
150812
+
Gln
TTG
[ENA]
¢þ
>WENV181004224
ODVX01160856
[ODVX] human metagenome; G_DNA_Supragingival plaque
178
249
+
Gln
TTG
[ENA]
¢þ
>WENV181010779
ODWI01000150
[ODWI] human metagenome; G_DNA_Tongue dorsum
15571
15642
+
Gln
TTG
[ENA]
¢þ
>WENV181012158
ODWJ01031227
[ODWJ] human metagenome; G_DNA_Buccal mucosa
112
41
-
Gln
TTG
[ENA]
¢þ
>WENV181013572
ODWN01001639
[ODWN] human metagenome; G_DNA_Tongue dorsum
562
633
+
Gln
TTG
[ENA]
¢þ
>WENV181015880
ODWR01000007
[ODWR] human metagenome; G_DNA_Tongue dorsum
154596
154525
-
Gln
TTG
[ENA]
¢þ
>WENV181021142
ODWV01002716
[ODWV] human metagenome; G_DNA_Tongue dorsum
6202
6131
-
Gln
TTG
[ENA]
¢þ
>WENV181032884
ODXN01001071
[ODXN] human metagenome; G_DNA_Tongue dorsum
13786
13715
-
Gln
TTG
[ENA]
¢þ
>WENV181039430
ODXQ01021671
[ODXQ] human metagenome; G_DNA_Tongue dorsum
1724
1795
+
Gln
TTG
[ENA]
¢þ
>WENV181041729
ODXS01034649
[ODXS] human metagenome; G_DNA_Tongue dorsum
171
242
+
Gln
TTG
[ENA]
¢þ
>WENV181043880
ODXV01001240
[ODXV] human metagenome; G_DNA_Tongue dorsum
11200
11129
-
Gln
TTG
[ENA]
¢þ
>WENV181051658
ODYE01000881
[ODYE] human metagenome; G_DNA_Tongue dorsum
6513
6442
-
Gln
TTG
[ENA]
¢þ
>WENV181057262
ODYL01000011
[ODYL] human metagenome; G_DNA_Tongue dorsum
41529
41600
+
Gln
TTG
[ENA]
¢þ
>WENV181059227
ODYM01000121
[ODYM] human metagenome; G_DNA_Tongue dorsum
2378
2307
-
Gln
TTG
[ENA]
¢þ
>WENV181065056
ODYP01254568
[ODYP] human metagenome; G_DNA_Supragingival plaque
100
171
+
Gln
TTG
[ENA]
¢þ
>WENV181068414
ODZZ01000025
[ODZZ] human metagenome; G_DNA_Tongue dorsum
46885
46956
+
Gln
TTG
[ENA]
¢þ
>WENV181074208
OEAO01004456
[OEAO] human metagenome; G_DNA_Tongue dorsum
273
344
+
Gln
TTG
[ENA]
¢þ
>WENV181084762
OEAX01000078
[OEAX] human metagenome; G_DNA_Tongue dorsum
31666
31595
-
Gln
TTG
[ENA]
¢þ
>WENV181086127
OEAY01000126
[OEAY] human metagenome; G_DNA_Tongue dorsum
49641
49712
+
Gln
TTG
[ENA]
¢þ
>WENV181094898
OEBY01001767
[OEBY] human metagenome; G_DNA_Tongue dorsum
240
311
+
Gln
TTG
[ENA]
¢þ
>WENV181096567
OECA01000011
[OECA] human metagenome; G_DNA_Tongue dorsum
47884
47955
+
Gln
TTG
[ENA]
¢þ
>WENV181101378
OECT01000004
[OECT] human metagenome; G_DNA_Tongue dorsum
47730
47801
+
Gln
TTG
[ENA]
¢þ
>WENV181103756
OECV01002730
[OECV] human metagenome; G_DNA_Throat
1620
1691
+
Gln
TTG
[ENA]
¢þ
>WENV181104660
OEED01000029
[OEED] human metagenome; G_DNA_Tongue dorsum
73423
73352
-
Gln
TTG
[ENA]
¢þ
>WENV181108627
OEEJ01000108
[OEEJ] human metagenome; G_DNA_Tongue dorsum
37314
37243
-
Gln
TTG
[ENA]
¢þ
>WENV181111898
OEEL01000023
[OEEL] human metagenome; G_DNA_Tongue dorsum
47730
47801
+
Gln
TTG
[ENA]
¢þ
>WENV181114065
OEEO01000073
[OEEO] human metagenome; G_DNA_Supragingival plaque
35600
35529
-
Gln
TTG
[ENA]
¢þ
>WENV181119977
OEFJ01001249
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
177
106
-
Gln
TTG
[ENA]
¢þ
>WENV181125605
OEFU01004663
[OEFU] human metagenome; G_DNA_Saliva
863
934
+
Gln
TTG
[ENA]
¢þ
>WENV181129728
OEFX01104365
[OEFX] human metagenome; G_DNA_Tongue dorsum
244
173
-
Gln
TTG
[ENA]
¢þ
>WENV181130015
OEFY01000399
[OEFY] human metagenome; G_DNA_Throat
2129
2058
-
Gln
TTG
[ENA]
¢þ
>WENV181139846
OEGN01028918
[OEGN] human metagenome; G_DNA_Tongue dorsum
497
568
+
Gln
TTG
[ENA]
¢þ
>WENV181141096
OEGT01001230
[OEGT] human metagenome; G_DNA_Throat
10786
10715
-
Gln
TTG
[ENA]
¢þ
>WENV181150006
OEHW01000207
[OEHW] human metagenome; G_DNA_Tongue dorsum
22597
22526
-
Gln
TTG
[ENA]
¢þ
>WENV181156975
OEIG01000032
[OEIG] human metagenome; G_DNA_Hard palate
53375
53446
+
Gln
TTG
[ENA]
¢þ
>WENV181176186
OEJR01000106
[OEJR] human metagenome; G_DNA_Saliva
15346
15417
+
Gln
TTG
[ENA]
¢þ
>W141226361
BAKD01000002
Bacteroidota
Hoylesella nanceiensis JCM 15639 [BAKD]
82762
82689
-
Gln
TTG
[ENA]
¡û
>W10105035
ACWZ01000003
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
350824
350751
-
Gln
TTG
[ENA]
¡û
>W11107355
ACWZ01000003
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
350824
350751
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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