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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacteroidetes
Anticodon = TTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468371 (109 seq.)
>PL171000550
CP003667
Bacteroidetes
Prevotella sp. oral taxon 299 str. F0039 plasmid:unnamed
1659793
1659868
+
Lys
TTT
[ENA]
¡û
>W131165944
ARBZ01000005
Bacteroidota
Hoylesella nanceiensis DSM 19126 [ARBZ]
50363
50438
+
Lys
TTT
[ENA]
¡û
>WENV180003501
FLNZ01005211
[FLNZ] bioreactor metagenome; Moose rumen
63149
63076
-
Lys
TTT
[ENA]
¢þ
>WENV180011766
FLSK01041038
[FLSK] metagenome; saliva
772
698
-
Lys
TTT
[ENA]
¢þ
>WENV180405343
OBTM01001979
[OBTM] human gut metagenome; ENVO:feces
2396
2323
-
Lys
TTT
[ENA]
¢þ
>W141042584
AMEP01000095
Bacteroidota
Hoylesella saccharolytica F0055 [AMEP]
51240
51315
+
Lys
TTT
[ENA]
¡û
>WENV180673591
OCVV011341770
[OCVV] gut metagenome; gut
202
129
-
Lys
TTT
[ENA]
¢þ
>WENV180673592
OCVV011341770
[OCVV] gut metagenome; gut
202
129
-
Lys
TTT
[ENA]
¢þ
>WENV180683651
OCVV012844304
[OCVV] gut metagenome; gut
1509
1434
-
Lys
TTT
[ENA]
¢þ
>WENV180683652
OCVV012844304
[OCVV] gut metagenome; gut
1509
1434
-
Lys
TTT
[ENA]
¢þ
>WENV180684365
OCVV012856520
[OCVV] gut metagenome; gut
7875
7802
-
Lys
TTT
[ENA]
¢þ
>WENV180684366
OCVV012856520
[OCVV] gut metagenome; gut
7875
7802
-
Lys
TTT
[ENA]
¢þ
>WENV180705648
ODEJ01012036
[ODEJ] human metagenome; G_DNA_Tongue dorsum
1416
1490
+
Lys
TTT
[ENA]
¢þ
>WENV180708570
ODFJ01003154
[ODFJ] human metagenome; G_DNA_Tongue dorsum
82
8
-
Lys
TTT
[ENA]
¢þ
>WENV180712525
ODFT01002696
[ODFT] human metagenome; G_DNA_Posterior fornix
1387
1460
+
Lys
TTT
[ENA]
¢þ
>WENV180719411
ODGJ01001453
[ODGJ] human metagenome; G_DNA_Tongue dorsum
4945
5019
+
Lys
TTT
[ENA]
¢þ
>WENV180722182
ODGM01000004
[ODGM] human metagenome; G_DNA_Palatine Tonsils
4547
4473
-
Lys
TTT
[ENA]
¢þ
>WENV180726568
ODGU01000124
[ODGU] human metagenome; G_DNA_Supragingival plaque
27432
27505
+
Lys
TTT
[ENA]
¢þ
>WENV180768147
ODIG01003181
[ODIG] human metagenome; G_DNA_Tongue dorsum
1678
1604
-
Lys
TTT
[ENA]
¢þ
>WENV180774327
ODIJ01017872
[ODIJ] human metagenome; G_DNA_Tongue dorsum
865
939
+
Lys
TTT
[ENA]
¢þ
>WENV180776060
ODIK01014358
[ODIK] human metagenome; G_DNA_Tongue dorsum
673
747
+
Lys
TTT
[ENA]
¢þ
>WENV180779347
ODIN01002894
[ODIN] human metagenome; G_DNA_Throat
100
26
-
Lys
TTT
[ENA]
¢þ
>WENV180782482
ODIQ01000024
[ODIQ] human metagenome; G_DNA_Tongue dorsum
144278
144204
-
Lys
TTT
[ENA]
¢þ
>WENV180789493
ODIT01000018
[ODIT] human metagenome; G_DNA_Tongue dorsum
108822
108896
+
Lys
TTT
[ENA]
¢þ
>WENV180791995
ODIW01000022
[ODIW] human metagenome; G_DNA_Tongue dorsum
132584
132511
-
Lys
TTT
[ENA]
¢þ
>WENV180805426
ODJH01000007
[ODJH] human metagenome; G_DNA_Tongue dorsum
202922
202848
-
Lys
TTT
[ENA]
¢þ
>WENV180807808
ODJI01011409
[ODJI] human metagenome; G_DNA_Tongue dorsum
1482
1556
+
Lys
TTT
[ENA]
¢þ
>WENV180816813
ODJP01064113
[ODJP] human metagenome; G_DNA_Tongue dorsum
361
287
-
Lys
TTT
[ENA]
¢þ
>WENV180820931
ODJS01000008
[ODJS] human metagenome; G_DNA_Tongue dorsum
93186
93260
+
Lys
TTT
[ENA]
¢þ
>WENV180829989
ODKB01000144
[ODKB] human metagenome; G_DNA_Tongue dorsum
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV180845496
ODKT01000570
[ODKT] human metagenome; G_DNA_Supragingival plaque
2302
2375
+
Lys
TTT
[ENA]
¢þ
>WENV180853017
ODKW01018354
[ODKW] human metagenome; G_DNA_Tongue dorsum
987
1061
+
Lys
TTT
[ENA]
¢þ
>WENV180854378
ODKX01002716
[ODKX] human metagenome; G_DNA_Tongue dorsum
2600
2526
-
Lys
TTT
[ENA]
¢þ
>WENV180855739
ODKZ01000002
[ODKZ] human metagenome; G_DNA_Tongue dorsum
107568
107642
+
Lys
TTT
[ENA]
¢þ
>WENV180858132
ODLC01000938
[ODLC] human metagenome; G_DNA_Tongue dorsum
6971
7045
+
Lys
TTT
[ENA]
¢þ
>WENV180860153
ODLD01024416
[ODLD] human metagenome; G_DNA_Supragingival plaque
1085
1159
+
Lys
TTT
[ENA]
¢þ
>WENV180861142
ODLE01001059
[ODLE] human metagenome; G_DNA_Tongue dorsum
13050
13124
+
Lys
TTT
[ENA]
¢þ
>WENV180863895
ODLH01003863
[ODLH] human metagenome; G_DNA_Tongue dorsum
5240
5314
+
Lys
TTT
[ENA]
¢þ
>WENV180865702
ODLJ01000413
[ODLJ] human metagenome; G_DNA_Tongue dorsum
21848
21922
+
Lys
TTT
[ENA]
¢þ
>WENV180873521
ODLP01008772
[ODLP] human metagenome; G_DNA_Tongue dorsum
923
997
+
Lys
TTT
[ENA]
¢þ
>WENV180877389
ODLV01000013
[ODLV] human metagenome; G_DNA_Tongue dorsum
107568
107642
+
Lys
TTT
[ENA]
¢þ
>WENV180879755
ODLZ01002299
[ODLZ] human metagenome; G_DNA_Tongue dorsum
7453
7527
+
Lys
TTT
[ENA]
¢þ
>WENV180882573
ODMC01000155
[ODMC] human metagenome; G_DNA_Tongue dorsum
82
8
-
Lys
TTT
[ENA]
¢þ
>WENV180890659
ODMO01007733
[ODMO] human metagenome; G_DNA_Tongue dorsum
1300
1226
-
Lys
TTT
[ENA]
¢þ
>WENV180897307
ODNI01014635
[ODNI] human metagenome; G_DNA_Tongue dorsum
782
708
-
Lys
TTT
[ENA]
¢þ
>WENV180901168
ODOJ01047348
[ODOJ] human metagenome; G_DNA_Tongue dorsum
285
211
-
Lys
TTT
[ENA]
¢þ
>WENV180916420
ODTD01000019
[ODTD] human metagenome; G_DNA_Tongue dorsum
30822
30896
+
Lys
TTT
[ENA]
¢þ
>WENV180919610
ODTH01000004
[ODTH] human metagenome; G_DNA_Tongue dorsum
140987
140913
-
Lys
TTT
[ENA]
¢þ
>WENV180921334
ODTJ01000022
[ODTJ] human metagenome; G_DNA_Supragingival plaque
35434
35361
-
Lys
TTT
[ENA]
¢þ
>WENV180925135
ODTK01043693
[ODTK] human metagenome; G_DNA_Supragingival plaque
730
657
-
Lys
TTT
[ENA]
¢þ
>WENV180931225
ODTP01002160
[ODTP] human metagenome; G_DNA_Tongue dorsum
4023
3949
-
Lys
TTT
[ENA]
¢þ
>WENV180939567
ODTX01053046
[ODTX] human metagenome; G_DNA_Supragingival plaque
119
46
-
Lys
TTT
[ENA]
¢þ
>WENV180947818
ODUG01000054
[ODUG] human metagenome; G_DNA_Tongue dorsum
40769
40843
+
Lys
TTT
[ENA]
¢þ
>WENV180952925
ODUI01004054
[ODUI] human metagenome; G_DNA_Tongue dorsum
444
370
-
Lys
TTT
[ENA]
¢þ
>WENV180954868
ODUJ01012945
[ODUJ] human metagenome; G_DNA_Tongue dorsum
1643
1717
+
Lys
TTT
[ENA]
¢þ
>WENV180955072
ODUJ01030240
[ODUJ] human metagenome; G_DNA_Tongue dorsum
498
572
+
Lys
TTT
[ENA]
¢þ
>WENV180959077
ODUM01000049
[ODUM] human metagenome; G_DNA_Tongue dorsum
6622
6548
-
Lys
TTT
[ENA]
¢þ
>WENV180967678
ODUT01002290
[ODUT] human metagenome; G_DNA_Tongue dorsum
1800
1726
-
Lys
TTT
[ENA]
¢þ
>WENV180977666
ODUZ01003037
[ODUZ] human metagenome; G_DNA_Tongue dorsum
993
1067
+
Lys
TTT
[ENA]
¢þ
>WENV180979158
ODVC01000023
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
62421
62347
-
Lys
TTT
[ENA]
¢þ
>WENV180984762
ODVJ01000017
[ODVJ] human metagenome; G_DNA_Tongue dorsum
64345
64271
-
Lys
TTT
[ENA]
¢þ
>WENV180987995
ODVL01000028
[ODVL] human metagenome; G_DNA_Tongue dorsum
113198
113272
+
Lys
TTT
[ENA]
¢þ
>WENV180990747
ODVN01004248
[ODVN] human metagenome; G_DNA_Tongue dorsum
5492
5566
+
Lys
TTT
[ENA]
¢þ
>WENV180991538
ODVO01000009
[ODVO] human metagenome; G_DNA_Buccal mucosa
132555
132629
+
Lys
TTT
[ENA]
¢þ
>WENV181003100
ODVX01004791
[ODVX] human metagenome; G_DNA_Supragingival plaque
1827
1900
+
Lys
TTT
[ENA]
¢þ
>WENV181013793
ODWN01003935
[ODWN] human metagenome; G_DNA_Tongue dorsum
3772
3846
+
Lys
TTT
[ENA]
¢þ
>WENV181015956
ODWR01000036
[ODWR] human metagenome; G_DNA_Tongue dorsum
7490
7416
-
Lys
TTT
[ENA]
¢þ
>WENV181021152
ODWV01002875
[ODWV] human metagenome; G_DNA_Tongue dorsum
1412
1338
-
Lys
TTT
[ENA]
¢þ
>WENV181033553
ODXN01011104
[ODXN] human metagenome; G_DNA_Tongue dorsum
288
214
-
Lys
TTT
[ENA]
¢þ
>WENV181041902
ODXS01069100
[ODXS] human metagenome; G_DNA_Tongue dorsum
100
174
+
Lys
TTT
[ENA]
¢þ
>WENV181043986
ODXV01001957
[ODXV] human metagenome; G_DNA_Tongue dorsum
6643
6569
-
Lys
TTT
[ENA]
¢þ
>WENV181051609
ODYE01000429
[ODYE] human metagenome; G_DNA_Tongue dorsum
6428
6354
-
Lys
TTT
[ENA]
¢þ
>WENV181057485
ODYL01000193
[ODYL] human metagenome; G_DNA_Tongue dorsum
39369
39443
+
Lys
TTT
[ENA]
¢þ
>WENV181059479
ODYM01001352
[ODYM] human metagenome; G_DNA_Tongue dorsum
5477
5551
+
Lys
TTT
[ENA]
¢þ
>WENV181063973
ODYP01006928
[ODYP] human metagenome; G_DNA_Supragingival plaque
2987
2914
-
Lys
TTT
[ENA]
¢þ
>WENV181066154
ODYV01095122
[ODYV] human metagenome; G_DNA_Buccal mucosa
126
52
-
Lys
TTT
[ENA]
¢þ
>WENV181068381
ODZZ01000003
[ODZZ] human metagenome; G_DNA_Tongue dorsum
143229
143155
-
Lys
TTT
[ENA]
¢þ
>WENV181073886
OEAO01001526
[OEAO] human metagenome; G_DNA_Tongue dorsum
5985
5911
-
Lys
TTT
[ENA]
¢þ
>WENV181075906
OEAP01000683
[OEAP] human metagenome; G_DNA_Supragingival plaque
17787
17714
-
Lys
TTT
[ENA]
¢þ
>WENV181085630
OEAX01026366
[OEAX] human metagenome; G_DNA_Tongue dorsum
631
705
+
Lys
TTT
[ENA]
¢þ
>WENV181095614
OEBY01013699
[OEBY] human metagenome; G_DNA_Tongue dorsum
82
8
-
Lys
TTT
[ENA]
¢þ
>WENV181096564
OECA01000006
[OECA] human metagenome; G_DNA_Tongue dorsum
106845
106919
+
Lys
TTT
[ENA]
¢þ
>WENV181101375
OECT01000003
[OECT] human metagenome; G_DNA_Tongue dorsum
113877
113951
+
Lys
TTT
[ENA]
¢þ
>WENV181104613
OEED01000011
[OEED] human metagenome; G_DNA_Tongue dorsum
39368
39442
+
Lys
TTT
[ENA]
¢þ
>WENV181108570
OEEJ01000078
[OEEJ] human metagenome; G_DNA_Tongue dorsum
63791
63718
-
Lys
TTT
[ENA]
¢þ
>WENV181111946
OEEL01000044
[OEEL] human metagenome; G_DNA_Tongue dorsum
94536
94462
-
Lys
TTT
[ENA]
¢þ
>WENV181113918
OEEO01000009
[OEEO] human metagenome; G_DNA_Supragingival plaque
109436
109510
+
Lys
TTT
[ENA]
¢þ
>WENV181140283
OEGN01095332
[OEGN] human metagenome; G_DNA_Tongue dorsum
226
300
+
Lys
TTT
[ENA]
¢þ
>WENV181140998
OEGT01000670
[OEGT] human metagenome; G_DNA_Throat
12735
12809
+
Lys
TTT
[ENA]
¢þ
>WENV181150336
OEHW01001595
[OEHW] human metagenome; G_DNA_Tongue dorsum
7630
7704
+
Lys
TTT
[ENA]
¢þ
>WENV181157082
OEIG01000348
[OEIG] human metagenome; G_DNA_Hard palate
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV181176335
OEJR01001264
[OEJR] human metagenome; G_DNA_Saliva
3778
3704
-
Lys
TTT
[ENA]
¢þ
>W141226364
BAKD01000003
Bacteroidota
Hoylesella nanceiensis JCM 15639 [BAKD]
50260
50335
+
Lys
TTT
[ENA]
¡û
>W141226848
BAKN01000025
Bacteroidota
Hoylesella saccharolytica JCM 17484 [BAKN]
14004
14079
+
Lys
TTT
[ENA]
¡û
>W141276442
JADU01000018
Bacteroidota
Hallella seregens ATCC 51272 [JADU]
97732
97805
+
Lys
TTT
[ENA]
¡û
>WENV170670163
LAHS01072742
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
354
281
-
Lys
TTT
[ENA]
¢þ
>WENV170778864
LXOW01450879
[LXOW] bovine gut metagenome; Cow rumen
14331
14406
+
Lys
TTT
[ENA]
¢þ
>W141559904
JHXD01000023
Bacteroidota
Xylanibacter ruminicola Ga6B6 [JHXD]
10258
10331
+
Lys
TTT
[ENA]
¡û
>W141817417
JQKR01000011
Bacteroidota
Prevotella sp. FD3004 [JQKR]
27236
27163
-
Lys
TTT
[ENA]
¡û
>W1810577049
QENY01000006
Bacteroidota
Hallella colorans DSM 100333 [QENY]
37807
37734
-
Lys
TTT
[ENA]
¡û
>C151004248
CP003369
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
1116528
1116601
+
Lys
TTT
[Ensembl]
¡û
>W10105040
ACWZ01000009
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
11016
11091
+
Lys
TTT
[ENA]
¡û
>W11107360
ACWZ01000009
Bacteroidota
Prevotella sp. oral taxon 299 oral taxon 299 str. F0039 [ACWZ]
11016
11091
+
Lys
TTT
[ENA]
¡û
>W11170829
AFPW01000044
Bacteroidota
Prevotella dentalis DSM 3688 [AFPW]
11028
10955
-
Lys
TTT
[ENA]
¡û
>W121017376
AGRS01000058
Bacteroidota
Prevotella dentalis DSM 3688 [AGRS]
97089
97016
-
Lys
TTT
[ENA]
¡û
>W1710533556
FNRF01000003
Bacteroidota
Xylanibacter ruminicola [FNRF]
122255
122328
+
Lys
TTT
[ENA]
¡û
>W1710538787
FNUV01000001
Bacteroidota
Xylanibacter ruminicola [FNUV]
93699
93626
-
Lys
TTT
[ENA]
¡û
>W1710554925
FOIV01000003
Bacteroidota
Prevotella sp. khp7 [FOIV]
94706
94631
-
Lys
TTT
[ENA]
¡û
>W1710572101
FOWK01000012
Bacteroidota
Prevotella sp. tf2-5 [FOWK]
67419
67346
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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