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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Basidiomycota
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.675920 (3 seq.)
>FG090800019
AE017343
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
436970
436889
-
Met
CAT
[ENA]
¡û
>FG090800032
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
946754
946836
+
Met
CAT
[ENA]
¡û
>FG090800044
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
938025
937943
-
Met
CAT
[ENA]
¡û
Identical group No.782076 (3 seq.)
>FU090900063
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
330187
330090
-
Met
CAT
[ENA]
¡û
>FG091900208
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
980363
980460
+
Met
CAT
[ENA]
¡û
>FG091900213
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
991640
991543
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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