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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Basidiomycota
Anticodon = CTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659363 (5 seq.)
>FG090800022
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
33888
33985
+
Glu
CTC
[ENA]
¡û
>FG090800023
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
12772
12677
-
Glu
CTC
[ENA]
¡û
>FG091800019
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
12773
12674
-
Glu
CTC
[ENA]
¡û
>FG091800020
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
33887
33986
+
Glu
CTC
[ENA]
¡û
>FG091900214
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
642881
642786
-
Glu
CTC
[ENA]
¡û
Identical group No.706738 (6 seq.)
>FG090800020
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
168188
168283
+
Glu
CTC
[ENA]
¡û
>FG090800042
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
119342
119438
+
Glu
CTC
[ENA]
¡û
>FG090800046
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
120117
120021
-
Glu
CTC
[ENA]
¡û
>FG090800047
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
100305
100211
-
Glu
CTC
[ENA]
¡û
>FG091800011
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
2281275
2281185
-
Glu
CTC
[ENA]
¡û
>FG091800014
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1542184
1542088
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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