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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Basidiomycota
Anticodon = GTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352326 (3 seq.)
>FG091200006
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1111137
1111045
-
Asn
GTT
[ENA]
¡û
>FG091900203
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1277557
1277654
+
Asn
GTT
[ENA]
¡û
>FG091900207
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1111136
1111046
-
Asn
GTT
[ENA]
¡û
Identical group No.363856 (2 seq.)
>FU090900075
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
912580
912677
+
Asn
GTT
[ENA]
¡û
>FU090900088
AE017356
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
408731
408828
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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