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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Betaproteobacteria
Anticodon = TAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60151 (2 seq.)
>W1711957369
NBTZ01000045
Betaproteobacteria
Caballeronia sordidicola [NBTZ]
2678
2589
-
Leu
TAA
[ENA]
¡û
>PL171000990
CP014310
Betaproteobacteria
Burkholderia sp. PAMC 26561 plasmid:unnamed3
139308
139397
+
Leu
TAA
[ENA]
¡û
Identical group No.208366 (2 seq.)
>PL171001489
CP021449
Betaproteobacteria
Ralstonia solanacearum SEPPX05 plasmid:pSEPPX05
1066750
1066834
+
Leu
TAA
[ENA]
¡û
>W1810235314
PPFC01001024
Betaproteobacteria
Ralstonia solanacearum UTT-25 [PPFC]
16708
16624
-
Leu
TAA
[ENA]
¡û
Identical group No.211746 (1 seq.)
>PL171000466
CP002879
Betaproteobacteria
Cupriavidus necator N-1 plasmid:pBB1
56997
57081
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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